miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 3' -60.9 NC_001806.1 + 40170 0.66 0.644285
Target:  5'- cGCGCCgUGG-CGCgaCUCgCCCGGCCGu -3'
miRNA:   3'- uCGCGG-ACCaGUG--GAGgGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 41016 0.66 0.684061
Target:  5'- uGGCGCCcGGgu-CCUCCgCCCAcuccucAUCACc -3'
miRNA:   3'- -UCGCGGaCCaguGGAGG-GGGU------UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 43103 0.76 0.20225
Target:  5'- aAGCGC--GGUCACCUCCacgggaguCCCGGCCGCc -3'
miRNA:   3'- -UCGCGgaCCAGUGGAGG--------GGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 44685 0.66 0.654262
Target:  5'- -aCGCUUGGggccccgagCGCCcCCUCCAACCAa -3'
miRNA:   3'- ucGCGGACCa--------GUGGaGGGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 45132 0.66 0.693923
Target:  5'- uGUGCCa-GUCGCCaucguaCCCCCGACC-Ca -3'
miRNA:   3'- uCGCGGacCAGUGGa-----GGGGGUUGGuG- -5'
5825 3' -60.9 NC_001806.1 + 46111 0.69 0.487993
Target:  5'- cGGgGCCUGcGcgggCGCCUCCgCCAcCCGCu -3'
miRNA:   3'- -UCgCGGAC-Ca---GUGGAGGgGGUuGGUG- -5'
5825 3' -60.9 NC_001806.1 + 49791 0.77 0.179036
Target:  5'- cGCGCgUGGgggucaugcacuUCGCCUCCCCCGAcaaccCCGCg -3'
miRNA:   3'- uCGCGgACC------------AGUGGAGGGGGUU-----GGUG- -5'
5825 3' -60.9 NC_001806.1 + 52531 0.68 0.524882
Target:  5'- uGGCGUCucgccggacgacgUGGUCcgcgggGCCUCCCCCgGACgACa -3'
miRNA:   3'- -UCGCGG-------------ACCAG------UGGAGGGGG-UUGgUG- -5'
5825 3' -60.9 NC_001806.1 + 52757 0.69 0.516269
Target:  5'- uGCGaacgaCCcGGUCGCCgagCCCCCcgcugcGGCCACa -3'
miRNA:   3'- uCGC-----GGaCCAGUGGa--GGGGG------UUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 55257 0.66 0.674158
Target:  5'- cGGCGCCcGG--GCCggCCCCCu-CCGCc -3'
miRNA:   3'- -UCGCGGaCCagUGGa-GGGGGuuGGUG- -5'
5825 3' -60.9 NC_001806.1 + 55820 0.66 0.654262
Target:  5'- gAGCcCCcGGaCACCcccgCCCCgAGCCACa -3'
miRNA:   3'- -UCGcGGaCCaGUGGa---GGGGgUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 56454 0.66 0.664222
Target:  5'- aAGCGCCUGacaCAgCUCCgUCAggGCCACc -3'
miRNA:   3'- -UCGCGGACca-GUgGAGGgGGU--UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 57041 0.66 0.664222
Target:  5'- cGgGCCcGGg-GCCggggCCCCCGGCUGCg -3'
miRNA:   3'- uCgCGGaCCagUGGa---GGGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 59614 0.67 0.614329
Target:  5'- aAGCGCCgGG--GCCUUggggCCCCGGCCGg -3'
miRNA:   3'- -UCGCGGaCCagUGGAG----GGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 65201 0.66 0.684061
Target:  5'- cGGgGCCgacUGGaUCccCCUCCCCCccgaauACCGCa -3'
miRNA:   3'- -UCgCGG---ACC-AGu-GGAGGGGGu-----UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 65673 0.72 0.35948
Target:  5'- uGCGCUggGGcCGCCggccuccugUCCCCCAACCGg -3'
miRNA:   3'- uCGCGGa-CCaGUGG---------AGGGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 67163 0.66 0.684061
Target:  5'- cGGuCGCCUccaucagcuGGcCccagGCCUCgCCCAGCCGCu -3'
miRNA:   3'- -UC-GCGGA---------CCaG----UGGAGgGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 68188 0.66 0.693923
Target:  5'- cAGCGCCuauUGG-CgagccuagccgGCCUUCgCCAACCGCc -3'
miRNA:   3'- -UCGCGG---ACCaG-----------UGGAGGgGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 70129 0.69 0.47873
Target:  5'- gGGCGCgCUGaUCAcCCUCCUcgaaCCGGCCGCc -3'
miRNA:   3'- -UCGCG-GACcAGU-GGAGGG----GGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 70259 0.66 0.684061
Target:  5'- cGGCcCCUGGUCcaGCUgcagCCCCCc-CCGCc -3'
miRNA:   3'- -UCGcGGACCAG--UGGa---GGGGGuuGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.