miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 3' -60.9 NC_001806.1 + 70 0.71 0.391391
Target:  5'- cGGCGUCUGGcCGcuCCUCCCCCcGCUc- -3'
miRNA:   3'- -UCGCGGACCaGU--GGAGGGGGuUGGug -5'
5825 3' -60.9 NC_001806.1 + 1683 0.66 0.653265
Target:  5'- cGCGCCgGG-CGCCauggcgucgguggUCCCCgaGGCCGCc -3'
miRNA:   3'- uCGCGGaCCaGUGG-------------AGGGGg-UUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 1939 0.66 0.703736
Target:  5'- cGGCGCa-GGUC-CCgcgCCgCCGGCCAg -3'
miRNA:   3'- -UCGCGgaCCAGuGGa--GGgGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 3387 0.73 0.287911
Target:  5'- cGGcCGCCaGGUCGCCgucgaagCCCUCGGCCAg -3'
miRNA:   3'- -UC-GCGGaCCAGUGGa------GGGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 3672 0.7 0.433786
Target:  5'- cGGCGCCggGGcUCcCCgcggCCCCCGucagcGCCGCg -3'
miRNA:   3'- -UCGCGGa-CC-AGuGGa---GGGGGU-----UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 3932 0.7 0.416506
Target:  5'- aAGCagGCCUGGUCcagcGCCacgUCCCCGgggACCACg -3'
miRNA:   3'- -UCG--CGGACCAG----UGGa--GGGGGU---UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 9729 0.69 0.469553
Target:  5'- gGGCgGCCcccaUCACCgCCCCUAACCGCa -3'
miRNA:   3'- -UCG-CGGacc-AGUGGaGGGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 20145 0.67 0.59441
Target:  5'- uGCGCCgGaGagACCcgCCCCCcGCCGCc -3'
miRNA:   3'- uCGCGGaC-CagUGGa-GGGGGuUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 21574 0.66 0.664222
Target:  5'- -cCGCCU-GUCGCCgcgCCcgccggCCCAGCCGCc -3'
miRNA:   3'- ucGCGGAcCAGUGGa--GG------GGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 21792 0.67 0.598387
Target:  5'- cGGCGCCggcagcccccgggcGGaCGCCgCCCCCGcccggGCCACc -3'
miRNA:   3'- -UCGCGGa-------------CCaGUGGaGGGGGU-----UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 22770 0.66 0.693923
Target:  5'- cGaCGCCgGG-CGCCgcgCCCaggCCGGCCGCg -3'
miRNA:   3'- uC-GCGGaCCaGUGGa--GGG---GGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 23097 0.72 0.336766
Target:  5'- --aGCCUGGUCGCCggggCCCUgGGCCccGCg -3'
miRNA:   3'- ucgCGGACCAGUGGa---GGGGgUUGG--UG- -5'
5825 3' -60.9 NC_001806.1 + 23246 0.66 0.654262
Target:  5'- cGCGCUggcGGcCGCCgccgCCUCCGccgcGCCGCg -3'
miRNA:   3'- uCGCGGa--CCaGUGGa---GGGGGU----UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 23543 0.66 0.692939
Target:  5'- gGGCGgCUGG-CGgCggcagCCCCCGgggcccaGCCACa -3'
miRNA:   3'- -UCGCgGACCaGUgGa----GGGGGU-------UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 23724 0.66 0.654262
Target:  5'- uGCGCCgGGccCGCCcccgCCgCCCAgGCCGCg -3'
miRNA:   3'- uCGCGGaCCa-GUGGa---GG-GGGU-UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 23854 0.69 0.487993
Target:  5'- uGGCgGCCUGGaugCGCCagaUCCCCGACCcCg -3'
miRNA:   3'- -UCG-CGGACCa--GUGGa--GGGGGUUGGuG- -5'
5825 3' -60.9 NC_001806.1 + 24816 0.68 0.554937
Target:  5'- cGGCGCCgcccgGGauUCGCUgggCCUCGGCCACg -3'
miRNA:   3'- -UCGCGGa----CC--AGUGGag-GGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 28525 0.67 0.624311
Target:  5'- cAGgGCCcggGGUCGCCgugggacCCCCUGACuCAUa -3'
miRNA:   3'- -UCgCGGa--CCAGUGGa------GGGGGUUG-GUG- -5'
5825 3' -60.9 NC_001806.1 + 30535 0.71 0.407183
Target:  5'- aGGCGCg-GGUCGggccaggaaaaccCCUCCCCCcaguCCACg -3'
miRNA:   3'- -UCGCGgaCCAGU-------------GGAGGGGGuu--GGUG- -5'
5825 3' -60.9 NC_001806.1 + 39070 0.68 0.525842
Target:  5'- aAGCGCCacgagCACCa-CCCCGGCCACc -3'
miRNA:   3'- -UCGCGGacca-GUGGagGGGGUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.