miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 3' -60.9 NC_001806.1 + 1683 0.66 0.653265
Target:  5'- cGCGCCgGG-CGCCauggcgucgguggUCCCCgaGGCCGCc -3'
miRNA:   3'- uCGCGGaCCaGUGG-------------AGGGGg-UUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 70259 0.66 0.684061
Target:  5'- cGGCcCCUGGUCcaGCUgcagCCCCCc-CCGCc -3'
miRNA:   3'- -UCGcGGACCAG--UGGa---GGGGGuuGGUG- -5'
5825 3' -60.9 NC_001806.1 + 100715 0.66 0.684061
Target:  5'- cAGCGUgUGGgucagCGCCUCCaCgCCGGgCGCc -3'
miRNA:   3'- -UCGCGgACCa----GUGGAGG-G-GGUUgGUG- -5'
5825 3' -60.9 NC_001806.1 + 85716 0.66 0.674158
Target:  5'- uAGCGCC-GG-CACCcaccgCCCCgAACCcuGCg -3'
miRNA:   3'- -UCGCGGaCCaGUGGa----GGGGgUUGG--UG- -5'
5825 3' -60.9 NC_001806.1 + 55257 0.66 0.674158
Target:  5'- cGGCGCCcGG--GCCggCCCCCu-CCGCc -3'
miRNA:   3'- -UCGCGGaCCagUGGa-GGGGGuuGGUG- -5'
5825 3' -60.9 NC_001806.1 + 71079 0.66 0.674158
Target:  5'- aGGgGCCUGGggggacuacaGCCUcggCCCCCugggccagacGACCGCg -3'
miRNA:   3'- -UCgCGGACCag--------UGGA---GGGGG----------UUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 102337 0.66 0.644285
Target:  5'- cGCGUCccgGGggACgUCCCCCGggGCCGCc -3'
miRNA:   3'- uCGCGGa--CCagUGgAGGGGGU--UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 44685 0.66 0.654262
Target:  5'- -aCGCUUGGggccccgagCGCCcCCUCCAACCAa -3'
miRNA:   3'- ucGCGGACCa--------GUGGaGGGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 40170 0.66 0.644285
Target:  5'- cGCGCCgUGG-CGCgaCUCgCCCGGCCGu -3'
miRNA:   3'- uCGCGG-ACCaGUG--GAGgGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 23724 0.66 0.654262
Target:  5'- uGCGCCgGGccCGCCcccgCCgCCCAgGCCGCg -3'
miRNA:   3'- uCGCGGaCCa-GUGGa---GG-GGGU-UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 121373 0.66 0.703736
Target:  5'- uGGCGCguauCUGGUCcccgcgaagACC-CCCCCGgaGCCGg -3'
miRNA:   3'- -UCGCG----GACCAG---------UGGaGGGGGU--UGGUg -5'
5825 3' -60.9 NC_001806.1 + 23246 0.66 0.654262
Target:  5'- cGCGCUggcGGcCGCCgccgCCUCCGccgcGCCGCg -3'
miRNA:   3'- uCGCGGa--CCaGUGGa---GGGGGU----UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 91051 0.66 0.684061
Target:  5'- cAGCGCCUGG---CCUCCgUCAuggccggagacGCCGCc -3'
miRNA:   3'- -UCGCGGACCaguGGAGGgGGU-----------UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 120160 0.66 0.684061
Target:  5'- cAGCGCCUGcGcuaUgACUUUggCCCCGACCAa -3'
miRNA:   3'- -UCGCGGAC-C---AgUGGAG--GGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 56454 0.66 0.664222
Target:  5'- aAGCGCCUGacaCAgCUCCgUCAggGCCACc -3'
miRNA:   3'- -UCGCGGACca-GUgGAGGgGGU--UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 21574 0.66 0.664222
Target:  5'- -cCGCCU-GUCGCCgcgCCcgccggCCCAGCCGCc -3'
miRNA:   3'- ucGCGGAcCAGUGGa--GG------GGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 70510 0.66 0.684061
Target:  5'- -cCGCCUGGggcCCUggcCCCCCGagGCCAUg -3'
miRNA:   3'- ucGCGGACCaguGGA---GGGGGU--UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 41016 0.66 0.684061
Target:  5'- uGGCGCCcGGgu-CCUCCgCCCAcuccucAUCACc -3'
miRNA:   3'- -UCGCGGaCCaguGGAGG-GGGU------UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 65201 0.66 0.684061
Target:  5'- cGGgGCCgacUGGaUCccCCUCCCCCccgaauACCGCa -3'
miRNA:   3'- -UCgCGG---ACC-AGu-GGAGGGGGu-----UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 57041 0.66 0.664222
Target:  5'- cGgGCCcGGg-GCCggggCCCCCGGCUGCg -3'
miRNA:   3'- uCgCGGaCCagUGGa---GGGGGUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.