miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 3' -60.9 NC_001806.1 + 125831 0.81 0.085856
Target:  5'- uGGCGCCUGacgCGCCgcgggCCCCCGGCCGCc -3'
miRNA:   3'- -UCGCGGACca-GUGGa----GGGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 121436 0.79 0.129429
Target:  5'- gGGgGCCUGGUggCACCUCCCCagCGGCCAg -3'
miRNA:   3'- -UCgCGGACCA--GUGGAGGGG--GUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 49791 0.77 0.179036
Target:  5'- cGCGCgUGGgggucaugcacuUCGCCUCCCCCGAcaaccCCGCg -3'
miRNA:   3'- uCGCGgACC------------AGUGGAGGGGGUU-----GGUG- -5'
5825 3' -60.9 NC_001806.1 + 43103 0.76 0.20225
Target:  5'- aAGCGC--GGUCACCUCCacgggaguCCCGGCCGCc -3'
miRNA:   3'- -UCGCGgaCCAGUGGAGG--------GGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 120757 0.75 0.212246
Target:  5'- cGGCGCCUucccccGGcCACCUCgCCCAcCCACu -3'
miRNA:   3'- -UCGCGGA------CCaGUGGAGgGGGUuGGUG- -5'
5825 3' -60.9 NC_001806.1 + 92532 0.75 0.239104
Target:  5'- aAGCGCgUGGaCAuCCUCCUCgGACCGCu -3'
miRNA:   3'- -UCGCGgACCaGU-GGAGGGGgUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 70586 0.74 0.244805
Target:  5'- cGCGCgCUGGUCGCgUCCCUCGcgaGCCuGCg -3'
miRNA:   3'- uCGCG-GACCAGUGgAGGGGGU---UGG-UG- -5'
5825 3' -60.9 NC_001806.1 + 127227 0.73 0.281405
Target:  5'- cAGCGCCUGcGUUcaucggACC-CCCCCucgcGCCACa -3'
miRNA:   3'- -UCGCGGAC-CAG------UGGaGGGGGu---UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 118737 0.73 0.287255
Target:  5'- gAGUGCCUGGcgGCCgcgggaaUCCCCUGGCCGCc -3'
miRNA:   3'- -UCGCGGACCagUGG-------AGGGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 3387 0.73 0.287911
Target:  5'- cGGcCGCCaGGUCGCCgucgaagCCCUCGGCCAg -3'
miRNA:   3'- -UC-GCGGaCCAGUGGa------GGGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 84855 0.73 0.315116
Target:  5'- gAGCGCCggcGGUCGCgCUCCUCUgcGGCCGg -3'
miRNA:   3'- -UCGCGGa--CCAGUG-GAGGGGG--UUGGUg -5'
5825 3' -60.9 NC_001806.1 + 133027 0.72 0.332351
Target:  5'- gAGCGCCUGGUCccggacacgugcaacGCCUgCCCUGcGCUGCg -3'
miRNA:   3'- -UCGCGGACCAG---------------UGGAgGGGGU-UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 23097 0.72 0.336766
Target:  5'- --aGCCUGGUCGCCggggCCCUgGGCCccGCg -3'
miRNA:   3'- ucgCGGACCAGUGGa---GGGGgUUGG--UG- -5'
5825 3' -60.9 NC_001806.1 + 120877 0.72 0.336766
Target:  5'- cGcCGCCUGGUCccccggggACCUUgCCCCGGCCGg -3'
miRNA:   3'- uC-GCGGACCAG--------UGGAG-GGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 65673 0.72 0.35948
Target:  5'- uGCGCUggGGcCGCCggccuccugUCCCCCAACCGg -3'
miRNA:   3'- uCGCGGa-CCaGUGG---------AGGGGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 87407 0.71 0.367285
Target:  5'- cGGaCGCUUGGgCGCCUCCCCCccggcgccccuaAAUCGCc -3'
miRNA:   3'- -UC-GCGGACCaGUGGAGGGGG------------UUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 143636 0.71 0.375206
Target:  5'- cAGCGCCccguccGGcgCGCCgCCCCCcGCCGCu -3'
miRNA:   3'- -UCGCGGa-----CCa-GUGGaGGGGGuUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 70 0.71 0.391391
Target:  5'- cGGCGUCUGGcCGcuCCUCCCCCcGCUc- -3'
miRNA:   3'- -UCGCGGACCaGU--GGAGGGGGuUGGug -5'
5825 3' -60.9 NC_001806.1 + 151780 0.71 0.391391
Target:  5'- cGGCGUCUGGcCGcuCCUCCCCCcGCUc- -3'
miRNA:   3'- -UCGCGGACCaGU--GGAGGGGGuUGGug -5'
5825 3' -60.9 NC_001806.1 + 70949 0.71 0.399653
Target:  5'- uGGCGCCcuUGGUCAgCUCggCCGACCAg -3'
miRNA:   3'- -UCGCGG--ACCAGUgGAGggGGUUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.