miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 3' -60.9 NC_001806.1 + 30535 0.71 0.407183
Target:  5'- aGGCGCg-GGUCGggccaggaaaaccCCUCCCCCcaguCCACg -3'
miRNA:   3'- -UCGCGgaCCAGU-------------GGAGGGGGuu--GGUG- -5'
5825 3' -60.9 NC_001806.1 + 3932 0.7 0.416506
Target:  5'- aAGCagGCCUGGUCcagcGCCacgUCCCCGgggACCACg -3'
miRNA:   3'- -UCG--CGGACCAG----UGGa--GGGGGU---UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 135994 0.7 0.416506
Target:  5'- cGGC-CUUGGUCucgucguCCUCCCCCAACa-- -3'
miRNA:   3'- -UCGcGGACCAGu------GGAGGGGGUUGgug -5'
5825 3' -60.9 NC_001806.1 + 3672 0.7 0.433786
Target:  5'- cGGCGCCggGGcUCcCCgcggCCCCCGucagcGCCGCg -3'
miRNA:   3'- -UCGCGGa-CC-AGuGGa---GGGGGU-----UGGUG- -5'
5825 3' -60.9 NC_001806.1 + 132706 0.7 0.433786
Target:  5'- gGGgGCCagGGUCGuCCUCCCCCcGCgaGCu -3'
miRNA:   3'- -UCgCGGa-CCAGU-GGAGGGGGuUGg-UG- -5'
5825 3' -60.9 NC_001806.1 + 136789 0.7 0.460468
Target:  5'- cAGCuGCCgggUGGUCGCCUCgCUgGACCGg -3'
miRNA:   3'- -UCG-CGG---ACCAGUGGAGgGGgUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 140155 0.7 0.460468
Target:  5'- gGGCGCCg---CGCCUCCaCCCccgacAACCGCc -3'
miRNA:   3'- -UCGCGGaccaGUGGAGG-GGG-----UUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 9729 0.69 0.469553
Target:  5'- gGGCgGCCcccaUCACCgCCCCUAACCGCa -3'
miRNA:   3'- -UCG-CGGacc-AGUGGaGGGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 70129 0.69 0.47873
Target:  5'- gGGCGCgCUGaUCAcCCUCCUcgaaCCGGCCGCc -3'
miRNA:   3'- -UCGCG-GACcAGU-GGAGGG----GGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 23854 0.69 0.487993
Target:  5'- uGGCgGCCUGGaugCGCCagaUCCCCGACCcCg -3'
miRNA:   3'- -UCG-CGGACCa--GUGGa--GGGGGUUGGuG- -5'
5825 3' -60.9 NC_001806.1 + 46111 0.69 0.487993
Target:  5'- cGGgGCCUGcGcgggCGCCUCCgCCAcCCGCu -3'
miRNA:   3'- -UCgCGGAC-Ca---GUGGAGGgGGUuGGUG- -5'
5825 3' -60.9 NC_001806.1 + 83223 0.69 0.497341
Target:  5'- cGcCGCCgacgUGGUCACCgCCCCCucaagggcCCGCg -3'
miRNA:   3'- uC-GCGG----ACCAGUGGaGGGGGuu------GGUG- -5'
5825 3' -60.9 NC_001806.1 + 74897 0.69 0.506767
Target:  5'- cGGCgGgCUGGUCggACCUCCCCgaGGCCGu -3'
miRNA:   3'- -UCG-CgGACCAG--UGGAGGGGg-UUGGUg -5'
5825 3' -60.9 NC_001806.1 + 96532 0.69 0.506767
Target:  5'- cGGCGCCgcccgccccUGG-CGCC-CCCCCAACgGg -3'
miRNA:   3'- -UCGCGG---------ACCaGUGGaGGGGGUUGgUg -5'
5825 3' -60.9 NC_001806.1 + 52757 0.69 0.516269
Target:  5'- uGCGaacgaCCcGGUCGCCgagCCCCCcgcugcGGCCACa -3'
miRNA:   3'- uCGC-----GGaCCAGUGGa--GGGGG------UUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 73340 0.69 0.516269
Target:  5'- cAGCGCCUuacGGUCGCCguaUCCGGCCu- -3'
miRNA:   3'- -UCGCGGA---CCAGUGGaggGGGUUGGug -5'
5825 3' -60.9 NC_001806.1 + 52531 0.68 0.524882
Target:  5'- uGGCGUCucgccggacgacgUGGUCcgcgggGCCUCCCCCgGACgACa -3'
miRNA:   3'- -UCGCGG-------------ACCAG------UGGAGGGGG-UUGgUG- -5'
5825 3' -60.9 NC_001806.1 + 39070 0.68 0.525842
Target:  5'- aAGCGCCacgagCACCa-CCCCGGCCACc -3'
miRNA:   3'- -UCGCGGacca-GUGGagGGGGUUGGUG- -5'
5825 3' -60.9 NC_001806.1 + 77447 0.68 0.545181
Target:  5'- cGCGCCcGGgcgucCGCC-CCaCCCGGCCAa -3'
miRNA:   3'- uCGCGGaCCa----GUGGaGG-GGGUUGGUg -5'
5825 3' -60.9 NC_001806.1 + 141919 0.68 0.552982
Target:  5'- aGGCGCCgaGGUCGCCgcaggcgacaccCCCCCGuuuguuaaauCCAUg -3'
miRNA:   3'- -UCGCGGa-CCAGUGGa-----------GGGGGUu---------GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.