miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 5' -56.7 NC_001806.1 + 69495 0.68 0.786754
Target:  5'- gCGGGGUCGAAcguGUUuggguUGGCGCGGGa- -3'
miRNA:   3'- aGCCCCGGUUU---CAGu----AUCGCGUCCgc -5'
5825 5' -56.7 NC_001806.1 + 11890 0.68 0.786754
Target:  5'- gCGGGGCCGAAGacggaagcaguUUcgGGuCGCAGGa- -3'
miRNA:   3'- aGCCCCGGUUUC-----------AGuaUC-GCGUCCgc -5'
5825 5' -56.7 NC_001806.1 + 150978 0.68 0.777517
Target:  5'- cUCGcGGGCCcacGAGcCGcGGCGCgccAGGCGg -3'
miRNA:   3'- -AGC-CCCGGu--UUCaGUaUCGCG---UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 128886 0.68 0.771912
Target:  5'- -gGGGGCgCGGAGUCGggagauccucugggGGC-CGGGCGu -3'
miRNA:   3'- agCCCCG-GUUUCAGUa-------------UCGcGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 30914 0.68 0.768149
Target:  5'- cCGGGGCC---GUCcc--CGCGGGCGg -3'
miRNA:   3'- aGCCCCGGuuuCAGuaucGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 1788 0.68 0.768149
Target:  5'- gUCcGGGCCGAAGcgCGU-GCGCAcGCGg -3'
miRNA:   3'- -AGcCCCGGUUUCa-GUAuCGCGUcCGC- -5'
5825 5' -56.7 NC_001806.1 + 24135 0.68 0.767206
Target:  5'- cCGGGGCCGugGAGUUucUggggcugcucgccAGCGCcGGCGa -3'
miRNA:   3'- aGCCCCGGU--UUCAGu-A-------------UCGCGuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 46110 0.68 0.74906
Target:  5'- cCGGGGCCu--------GCGCGGGCGc -3'
miRNA:   3'- aGCCCCGGuuucaguauCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 3098 0.68 0.74906
Target:  5'- gCGGcGGCCGcgGAGcUCGgcaGGCGCGGGUc -3'
miRNA:   3'- aGCC-CCGGU--UUC-AGUa--UCGCGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 3140 0.69 0.74325
Target:  5'- gCGGGGcCCAGGGccccggcgaccaggcUCAcGGCGCGcacGGCGg -3'
miRNA:   3'- aGCCCC-GGUUUC---------------AGUaUCGCGU---CCGC- -5'
5825 5' -56.7 NC_001806.1 + 4977 0.69 0.739357
Target:  5'- cCGGGcGUCGucGAGUCGUGGgGguGGuCGg -3'
miRNA:   3'- aGCCC-CGGU--UUCAGUAUCgCguCC-GC- -5'
5825 5' -56.7 NC_001806.1 + 83816 0.69 0.739357
Target:  5'- -aGGGGgCGGGGUC--GGCGCGGGa- -3'
miRNA:   3'- agCCCCgGUUUCAGuaUCGCGUCCgc -5'
5825 5' -56.7 NC_001806.1 + 129719 0.69 0.739357
Target:  5'- -gGGGGCCAcguucuuugggGAGUgGaAGCGCGccuuGGCGg -3'
miRNA:   3'- agCCCCGGU-----------UUCAgUaUCGCGU----CCGC- -5'
5825 5' -56.7 NC_001806.1 + 150877 0.69 0.739357
Target:  5'- cCGcGGGCCAGGGcCcgGGCaCGGGCc -3'
miRNA:   3'- aGC-CCCGGUUUCaGuaUCGcGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 136969 0.69 0.72956
Target:  5'- -gGGGGCCcgcGAG-CGUGGUGCGgucauGGCGg -3'
miRNA:   3'- agCCCCGGu--UUCaGUAUCGCGU-----CCGC- -5'
5825 5' -56.7 NC_001806.1 + 102357 0.69 0.728575
Target:  5'- cCGGGGCCGccggGAGcacccCGUGGUGCAucagcguGGCGa -3'
miRNA:   3'- aGCCCCGGU----UUCa----GUAUCGCGU-------CCGC- -5'
5825 5' -56.7 NC_001806.1 + 132706 0.69 0.709722
Target:  5'- -gGGGGCCAGGGUCGUccuccccccgcgAGCugGCccGGCGu -3'
miRNA:   3'- agCCCCGGUUUCAGUA------------UCG--CGu-CCGC- -5'
5825 5' -56.7 NC_001806.1 + 3725 0.69 0.709722
Target:  5'- -aGGGGCgCGuAGgCGcGGCGCAGGCu -3'
miRNA:   3'- agCCCCG-GUuUCaGUaUCGCGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 135659 0.69 0.699701
Target:  5'- aUUGGGucGCCAGgcccgcguuGGUCuc-GCGCAGGCGc -3'
miRNA:   3'- -AGCCC--CGGUU---------UCAGuauCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25651 0.69 0.699701
Target:  5'- cUGGGGCUggGGagGgGGCGguGGUGu -3'
miRNA:   3'- aGCCCCGGuuUCagUaUCGCguCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.