miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 5' -56.7 NC_001806.1 + 66323 0.67 0.847045
Target:  5'- aCGGGGacgcugaccgccCCAAAGcgcUCGgugcGGUGCAGGCa -3'
miRNA:   3'- aGCCCC------------GGUUUC---AGUa---UCGCGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 57046 0.67 0.847045
Target:  5'- cCGGGGCCGGGGccccCGgcuGCGUgccGGGCu -3'
miRNA:   3'- aGCCCCGGUUUCa---GUau-CGCG---UCCGc -5'
5825 5' -56.7 NC_001806.1 + 77364 0.67 0.838958
Target:  5'- aCGccaaGGCCAcAGGcCAgacgGGCGCGGGCGc -3'
miRNA:   3'- aGCc---CCGGU-UUCaGUa---UCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 29443 0.67 0.838958
Target:  5'- aUGGaGGCCGAGGaggcCGUcAGgGCGGGCa -3'
miRNA:   3'- aGCC-CCGGUUUCa---GUA-UCgCGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 29110 0.67 0.838958
Target:  5'- cUGGGGCCGcAGggCGUGGauggGgGGGCGg -3'
miRNA:   3'- aGCCCCGGUuUCa-GUAUCg---CgUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 147242 0.67 0.838958
Target:  5'- gUCGGGGCCGAGGaggaagaggCAgaggaggaagaGGCGgAGGCc -3'
miRNA:   3'- -AGCCCCGGUUUCa--------GUa----------UCGCgUCCGc -5'
5825 5' -56.7 NC_001806.1 + 132329 0.67 0.838958
Target:  5'- uUCGGGGaCCu-GGUCGaGGUGUgcgAGGUGg -3'
miRNA:   3'- -AGCCCC-GGuuUCAGUaUCGCG---UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 3191 0.67 0.838139
Target:  5'- gCGGccucgcugccgccGGCCAcgcgcAGGUCcccGCGCAGGCGc -3'
miRNA:   3'- aGCC-------------CCGGU-----UUCAGuauCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 67530 0.67 0.830682
Target:  5'- gUCGcGGCgAGAGaUCGgggGGCGCAGGaCGc -3'
miRNA:   3'- -AGCcCCGgUUUC-AGUa--UCGCGUCC-GC- -5'
5825 5' -56.7 NC_001806.1 + 21775 0.67 0.830682
Target:  5'- gCGGGGUCc--GUCG-AGCGC-GGCGc -3'
miRNA:   3'- aGCCCCGGuuuCAGUaUCGCGuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 74607 0.67 0.825629
Target:  5'- gCGGGcugucGCCAGAGgccacgcgCAUGGCcgaggaagcgcugcgGCAGGCGc -3'
miRNA:   3'- aGCCC-----CGGUUUCa-------GUAUCG---------------CGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 44945 0.67 0.822226
Target:  5'- cCGGGGCU--GG-C-UAGCGCGGGgGc -3'
miRNA:   3'- aGCCCCGGuuUCaGuAUCGCGUCCgC- -5'
5825 5' -56.7 NC_001806.1 + 109535 0.67 0.822226
Target:  5'- cUCGGGaGCCGGGGgagguGCGCcugggccaGGGCGa -3'
miRNA:   3'- -AGCCC-CGGUUUCaguauCGCG--------UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 148185 0.67 0.821371
Target:  5'- -gGGGGCgCGGGG-CGUccggcggGGgGCGGGCGg -3'
miRNA:   3'- agCCCCG-GUUUCaGUA-------UCgCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 3323 0.67 0.813597
Target:  5'- gCGGGGCCcgcGGGUCccuccGGCcGCGGGgGg -3'
miRNA:   3'- aGCCCCGGu--UUCAGua---UCG-CGUCCgC- -5'
5825 5' -56.7 NC_001806.1 + 28189 0.67 0.813597
Target:  5'- cCGGGcGCCAu-GUCuggGGCGCcauauugggGGGCGc -3'
miRNA:   3'- aGCCC-CGGUuuCAGua-UCGCG---------UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 4748 0.67 0.813597
Target:  5'- cCGGGGCCc-GGUCGccggcGGCGUcGGCu -3'
miRNA:   3'- aGCCCCGGuuUCAGUa----UCGCGuCCGc -5'
5825 5' -56.7 NC_001806.1 + 117692 0.67 0.803915
Target:  5'- cUCGGGGCCcGAGcccgCGUcggcccccuccgaGGCcaGUAGGCGg -3'
miRNA:   3'- -AGCCCCGGuUUCa---GUA-------------UCG--CGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 22569 0.68 0.795852
Target:  5'- -gGGGGCCGcgggGAGcCccGGCGCcGGCGc -3'
miRNA:   3'- agCCCCGGU----UUCaGuaUCGCGuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 40676 0.68 0.793138
Target:  5'- gUCGGGGgCGAuuuuggcaaaauacGG-CA-AGCGCAGGCu -3'
miRNA:   3'- -AGCCCCgGUU--------------UCaGUaUCGCGUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.