miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 5' -56.7 NC_001806.1 + 147731 0.71 0.62845
Target:  5'- aCGGGGCCAcGGcCGc-GCGgGGGCGc -3'
miRNA:   3'- aGCCCCGGUuUCaGUauCGCgUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 36716 0.71 0.62845
Target:  5'- -gGGGGUCGcuGUCAUAGUGCaaaAGGgGg -3'
miRNA:   3'- agCCCCGGUuuCAGUAUCGCG---UCCgC- -5'
5825 5' -56.7 NC_001806.1 + 141919 0.7 0.648916
Target:  5'- -aGGcGCCGAGGUCGc--CGCAGGCGa -3'
miRNA:   3'- agCCcCGGUUUCAGUaucGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 24880 0.7 0.648916
Target:  5'- -gGGGGCCGugGAGgugCugggGGCGgAGGCGg -3'
miRNA:   3'- agCCCCGGU--UUCa--Gua--UCGCgUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 71627 0.7 0.659134
Target:  5'- cCGGGGCCAuGGUacgGGgGCAuggguGGCGg -3'
miRNA:   3'- aGCCCCGGUuUCAguaUCgCGU-----CCGC- -5'
5825 5' -56.7 NC_001806.1 + 146065 0.7 0.659134
Target:  5'- gUGGcGGCCAGaggccaggucAGUCcgGGCggGCAGGCGc -3'
miRNA:   3'- aGCC-CCGGUU----------UCAGuaUCG--CGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 2738 0.7 0.679495
Target:  5'- cUCGgcGGGCCGGcgcgacacGGcCAcggGGCGCGGGCGg -3'
miRNA:   3'- -AGC--CCCGGUU--------UCaGUa--UCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 23955 0.7 0.679495
Target:  5'- -gGGGGCCGccgGAGUgGUccgccgAGCGC-GGCGg -3'
miRNA:   3'- agCCCCGGU---UUCAgUA------UCGCGuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 20185 0.7 0.679495
Target:  5'- cCGGGGCCGgcgcgGAGUCGggcacGGCGcCAGuGCu -3'
miRNA:   3'- aGCCCCGGU-----UUCAGUa----UCGC-GUC-CGc -5'
5825 5' -56.7 NC_001806.1 + 24550 0.7 0.679495
Target:  5'- cUCGGGGaCCAccGAcGcCAUGGCGCccGGCGc -3'
miRNA:   3'- -AGCCCC-GGU--UU-CaGUAUCGCGu-CCGC- -5'
5825 5' -56.7 NC_001806.1 + 66227 0.7 0.689622
Target:  5'- gUUGGGGgCGGAG-CGUuGUGUGGGCGg -3'
miRNA:   3'- -AGCCCCgGUUUCaGUAuCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 135659 0.69 0.699701
Target:  5'- aUUGGGucGCCAGgcccgcguuGGUCuc-GCGCAGGCGc -3'
miRNA:   3'- -AGCCC--CGGUU---------UCAGuauCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25651 0.69 0.699701
Target:  5'- cUGGGGCUggGGagGgGGCGguGGUGu -3'
miRNA:   3'- aGCCCCGGuuUCagUaUCGCguCCGC- -5'
5825 5' -56.7 NC_001806.1 + 151282 0.69 0.699701
Target:  5'- -gGGGGCCGGGGcCGgggGGCGgC-GGCGg -3'
miRNA:   3'- agCCCCGGUUUCaGUa--UCGC-GuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 33830 0.69 0.699701
Target:  5'- -gGGGGCCGGAGg-GUGGaagGCAGGgGg -3'
miRNA:   3'- agCCCCGGUUUCagUAUCg--CGUCCgC- -5'
5825 5' -56.7 NC_001806.1 + 3725 0.69 0.709722
Target:  5'- -aGGGGCgCGuAGgCGcGGCGCAGGCu -3'
miRNA:   3'- agCCCCG-GUuUCaGUaUCGCGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 132706 0.69 0.709722
Target:  5'- -gGGGGCCAGGGUCGUccuccccccgcgAGCugGCccGGCGu -3'
miRNA:   3'- agCCCCGGUUUCAGUA------------UCG--CGu-CCGC- -5'
5825 5' -56.7 NC_001806.1 + 102357 0.69 0.728575
Target:  5'- cCGGGGCCGccggGAGcacccCGUGGUGCAucagcguGGCGa -3'
miRNA:   3'- aGCCCCGGU----UUCa----GUAUCGCGU-------CCGC- -5'
5825 5' -56.7 NC_001806.1 + 136969 0.69 0.72956
Target:  5'- -gGGGGCCcgcGAG-CGUGGUGCGgucauGGCGg -3'
miRNA:   3'- agCCCCGGu--UUCaGUAUCGCGU-----CCGC- -5'
5825 5' -56.7 NC_001806.1 + 129719 0.69 0.739357
Target:  5'- -gGGGGCCAcguucuuugggGAGUgGaAGCGCGccuuGGCGg -3'
miRNA:   3'- agCCCCGGU-----------UUCAgUaUCGCGU----CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.