miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 5' -56.7 NC_001806.1 + 23955 0.7 0.679495
Target:  5'- -gGGGGCCGccgGAGUgGUccgccgAGCGC-GGCGg -3'
miRNA:   3'- agCCCCGGU---UUCAgUA------UCGCGuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 24135 0.68 0.767206
Target:  5'- cCGGGGCCGugGAGUUucUggggcugcucgccAGCGCcGGCGa -3'
miRNA:   3'- aGCCCCGGU--UUCAGu-A-------------UCGCGuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 24550 0.7 0.679495
Target:  5'- cUCGGGGaCCAccGAcGcCAUGGCGCccGGCGc -3'
miRNA:   3'- -AGCCCC-GGU--UU-CaGUAUCGCGu-CCGC- -5'
5825 5' -56.7 NC_001806.1 + 24880 0.7 0.648916
Target:  5'- -gGGGGCCGugGAGgugCugggGGCGgAGGCGg -3'
miRNA:   3'- agCCCCGGU--UUCa--Gua--UCGCgUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25097 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25131 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25165 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25199 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25233 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25267 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25301 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25335 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25369 0.66 0.862628
Target:  5'- -aGGGGCgGGAGgg--GGCGagGGGCGg -3'
miRNA:   3'- agCCCCGgUUUCaguaUCGCg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25420 0.72 0.547282
Target:  5'- -aGGGGCgGuGGUgGU-GCGCGGGCGc -3'
miRNA:   3'- agCCCCGgUuUCAgUAuCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 25651 0.69 0.699701
Target:  5'- cUGGGGCUggGGagGgGGCGguGGUGu -3'
miRNA:   3'- aGCCCCGGuuUCagUaUCGCguCCGC- -5'
5825 5' -56.7 NC_001806.1 + 28189 0.67 0.813597
Target:  5'- cCGGGcGCCAu-GUCuggGGCGCcauauugggGGGCGc -3'
miRNA:   3'- aGCCC-CGGUuuCAGua-UCGCG---------UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 29110 0.67 0.838958
Target:  5'- cUGGGGCCGcAGggCGUGGauggGgGGGCGg -3'
miRNA:   3'- aGCCCCGGUuUCa-GUAUCg---CgUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 29443 0.67 0.838958
Target:  5'- aUGGaGGCCGAGGaggcCGUcAGgGCGGGCa -3'
miRNA:   3'- aGCC-CCGGUUUCa---GUA-UCgCGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 30007 0.73 0.46971
Target:  5'- gUUGGGGUUggGGUUGUugaAGCGgAGGCGg -3'
miRNA:   3'- -AGCCCCGGuuUCAGUA---UCGCgUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 30914 0.68 0.768149
Target:  5'- cCGGGGCC---GUCcc--CGCGGGCGg -3'
miRNA:   3'- aGCCCCGGuuuCAGuaucGCGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.