miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 5' -56.7 NC_001806.1 + 1496 0.73 0.51664
Target:  5'- -gGGGGgCGucGUCGUcgggcuccagcagGGCGCGGGCGc -3'
miRNA:   3'- agCCCCgGUuuCAGUA-------------UCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 1788 0.68 0.768149
Target:  5'- gUCcGGGCCGAAGcgCGU-GCGCAcGCGg -3'
miRNA:   3'- -AGcCCCGGUUUCa-GUAuCGCGUcCGC- -5'
5825 5' -56.7 NC_001806.1 + 2378 0.72 0.557293
Target:  5'- cUCGGGGUCGGGGaUC-UGGCGCauccAGGCc -3'
miRNA:   3'- -AGCCCCGGUUUC-AGuAUCGCG----UCCGc -5'
5825 5' -56.7 NC_001806.1 + 2738 0.7 0.679495
Target:  5'- cUCGgcGGGCCGGcgcgacacGGcCAcggGGCGCGGGCGg -3'
miRNA:   3'- -AGC--CCCGGUU--------UCaGUa--UCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 2833 0.71 0.58761
Target:  5'- cCGGGGgCGugGAGggg-GGCGCGGGCGc -3'
miRNA:   3'- aGCCCCgGU--UUCaguaUCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 2859 0.66 0.87738
Target:  5'- gCGGGGa--GGGg---GGCGCGGGCGu -3'
miRNA:   3'- aGCCCCgguUUCaguaUCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 3098 0.68 0.74906
Target:  5'- gCGGcGGCCGcgGAGcUCGgcaGGCGCGGGUc -3'
miRNA:   3'- aGCC-CCGGU--UUC-AGUa--UCGCGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 3140 0.69 0.74325
Target:  5'- gCGGGGcCCAGGGccccggcgaccaggcUCAcGGCGCGcacGGCGg -3'
miRNA:   3'- aGCCCC-GGUUUC---------------AGUaUCGCGU---CCGC- -5'
5825 5' -56.7 NC_001806.1 + 3191 0.67 0.838139
Target:  5'- gCGGccucgcugccgccGGCCAcgcgcAGGUCcccGCGCAGGCGc -3'
miRNA:   3'- aGCC-------------CCGGU-----UUCAGuauCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 3323 0.67 0.813597
Target:  5'- gCGGGGCCcgcGGGUCccuccGGCcGCGGGgGg -3'
miRNA:   3'- aGCCCCGGu--UUCAGua---UCG-CGUCCgC- -5'
5825 5' -56.7 NC_001806.1 + 3523 0.66 0.873045
Target:  5'- gUCGGGGUCGucgccccccgcggggGAGgcg-GGCGC-GGCGg -3'
miRNA:   3'- -AGCCCCGGU---------------UUCaguaUCGCGuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 3725 0.69 0.709722
Target:  5'- -aGGGGCgCGuAGgCGcGGCGCAGGCu -3'
miRNA:   3'- agCCCCG-GUuUCaGUaUCGCGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 4748 0.67 0.813597
Target:  5'- cCGGGGCCc-GGUCGccggcGGCGUcGGCu -3'
miRNA:   3'- aGCCCCGGuuUCAGUa----UCGCGuCCGc -5'
5825 5' -56.7 NC_001806.1 + 4977 0.69 0.739357
Target:  5'- cCGGGcGUCGucGAGUCGUGGgGguGGuCGg -3'
miRNA:   3'- aGCCC-CGGU--UUCAGUAUCgCguCC-GC- -5'
5825 5' -56.7 NC_001806.1 + 11890 0.68 0.786754
Target:  5'- gCGGGGCCGAAGacggaagcaguUUcgGGuCGCAGGa- -3'
miRNA:   3'- aGCCCCGGUUUC-----------AGuaUC-GCGUCCgc -5'
5825 5' -56.7 NC_001806.1 + 14415 0.66 0.88443
Target:  5'- -aGGGGuCCGuuGUguUGGCcGCAGGUc -3'
miRNA:   3'- agCCCC-GGUuuCAguAUCG-CGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 18889 0.74 0.461326
Target:  5'- gCGGGGCCAgacgggcucggcaguAucccaucagguaacAGUCgcguaucagGUGGCGCAGGCGg -3'
miRNA:   3'- aGCCCCGGU---------------U--------------UCAG---------UAUCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 20185 0.7 0.679495
Target:  5'- cCGGGGCCGgcgcgGAGUCGggcacGGCGcCAGuGCu -3'
miRNA:   3'- aGCCCCGGU-----UUCAGUa----UCGC-GUC-CGc -5'
5825 5' -56.7 NC_001806.1 + 21775 0.67 0.830682
Target:  5'- gCGGGGUCc--GUCG-AGCGC-GGCGc -3'
miRNA:   3'- aGCCCCGGuuuCAGUaUCGCGuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 22569 0.68 0.795852
Target:  5'- -gGGGGCCGcgggGAGcCccGGCGCcGGCGc -3'
miRNA:   3'- agCCCCGGU----UUCaGuaUCGCGuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.