miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 5' -56.7 NC_001806.1 + 65029 0.66 0.887188
Target:  5'- aCGGGGCCAucuaucugcaggGAGUCAUccgaugacgaaucggAGUcaaGGGCGu -3'
miRNA:   3'- aGCCCCGGU------------UUCAGUA---------------UCGcg-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 109153 0.72 0.567355
Target:  5'- gCGGgugaGGCCAGAGUC--GGCGCGGGg- -3'
miRNA:   3'- aGCC----CCGGUUUCAGuaUCGCGUCCgc -5'
5825 5' -56.7 NC_001806.1 + 50514 0.71 0.577463
Target:  5'- -gGGGGCCGAGcaCGaGGCGCuGGGCGa -3'
miRNA:   3'- agCCCCGGUUUcaGUaUCGCG-UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 33994 0.71 0.577463
Target:  5'- cCGGGGCaGGGG-CGggGGCGUGGGCGg -3'
miRNA:   3'- aGCCCCGgUUUCaGUa-UCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 2833 0.71 0.58761
Target:  5'- cCGGGGgCGugGAGggg-GGCGCGGGCGc -3'
miRNA:   3'- aGCCCCgGU--UUCaguaUCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 77136 0.71 0.58761
Target:  5'- cCGGGGCCGuggagGAGcUCGgggGGCGCGuGGCc -3'
miRNA:   3'- aGCCCCGGU-----UUC-AGUa--UCGCGU-CCGc -5'
5825 5' -56.7 NC_001806.1 + 147685 0.71 0.597789
Target:  5'- -gGGGGCCGGGG-CGcgGGgGCGGGCc -3'
miRNA:   3'- agCCCCGGUUUCaGUa-UCgCGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 62256 0.71 0.618216
Target:  5'- cUGGGGCCGcGGaaucCAUGGCaGCAGGgGa -3'
miRNA:   3'- aGCCCCGGUuUCa---GUAUCG-CGUCCgC- -5'
5825 5' -56.7 NC_001806.1 + 38510 0.71 0.618216
Target:  5'- gUCGGGGCUggGguGUCGgauauggccucUGGUGguGGCGc -3'
miRNA:   3'- -AGCCCCGGuuU--CAGU-----------AUCGCguCCGC- -5'
5825 5' -56.7 NC_001806.1 + 2378 0.72 0.557293
Target:  5'- cUCGGGGUCGGGGaUC-UGGCGCauccAGGCc -3'
miRNA:   3'- -AGCCCCGGUUUC-AGuAUCGCG----UCCGc -5'
5825 5' -56.7 NC_001806.1 + 59150 0.72 0.547282
Target:  5'- --cGGGCCGGGGUCucgGGUGCGGGaCGc -3'
miRNA:   3'- agcCCCGGUUUCAGua-UCGCGUCC-GC- -5'
5825 5' -56.7 NC_001806.1 + 25420 0.72 0.547282
Target:  5'- -aGGGGCgGuGGUgGU-GCGCGGGCGc -3'
miRNA:   3'- agCCCCGgUuUCAgUAuCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 50095 0.76 0.357118
Target:  5'- gUCGGGGCCGcGGcCGUgccguuacugAGCGCGGGgGg -3'
miRNA:   3'- -AGCCCCGGUuUCaGUA----------UCGCGUCCgC- -5'
5825 5' -56.7 NC_001806.1 + 37786 0.75 0.381375
Target:  5'- cCGGGGCCGGGGcgCGggGGUccGCGGGCGg -3'
miRNA:   3'- aGCCCCGGUUUCa-GUa-UCG--CGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 18889 0.74 0.461326
Target:  5'- gCGGGGCCAgacgggcucggcaguAucccaucagguaacAGUCgcguaucagGUGGCGCAGGCGg -3'
miRNA:   3'- aGCCCCGGU---------------U--------------UCAG---------UAUCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 30007 0.73 0.46971
Target:  5'- gUUGGGGUUggGGUUGUugaAGCGgAGGCGg -3'
miRNA:   3'- -AGCCCCGGuuUCAGUA---UCGCgUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 63878 0.73 0.479117
Target:  5'- cCGGGGCCGGAGUCGUuaaaCGCcuGCa -3'
miRNA:   3'- aGCCCCGGUUUCAGUAuc--GCGucCGc -5'
5825 5' -56.7 NC_001806.1 + 40946 0.73 0.479117
Target:  5'- gUGGGGCCGAcuUCGUGGCaCAGGUc -3'
miRNA:   3'- aGCCCCGGUUucAGUAUCGcGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 1496 0.73 0.51664
Target:  5'- -gGGGGgCGucGUCGUcgggcuccagcagGGCGCGGGCGc -3'
miRNA:   3'- agCCCCgGUuuCAGUA-------------UCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 42321 0.72 0.546284
Target:  5'- gUCGGGGCgGGGGgCGUGgggaaucGCGUAGGUGg -3'
miRNA:   3'- -AGCCCCGgUUUCaGUAU-------CGCGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.