Results 1 - 20 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 112556 | 0.79 | 0.234319 |
Target: 5'- aCGGGGCCAAccuGGUCAcGGCGCucgugauGGGCa -3' miRNA: 3'- aGCCCCGGUU---UCAGUaUCGCG-------UCCGc -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 50095 | 0.76 | 0.357118 |
Target: 5'- gUCGGGGCCGcGGcCGUgccguuacugAGCGCGGGgGg -3' miRNA: 3'- -AGCCCCGGUuUCaGUA----------UCGCGUCCgC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 37786 | 0.75 | 0.381375 |
Target: 5'- cCGGGGCCGGGGcgCGggGGUccGCGGGCGg -3' miRNA: 3'- aGCCCCGGUUUCa-GUa-UCG--CGUCCGC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 18889 | 0.74 | 0.461326 |
Target: 5'- gCGGGGCCAgacgggcucggcaguAucccaucagguaacAGUCgcguaucagGUGGCGCAGGCGg -3' miRNA: 3'- aGCCCCGGU---------------U--------------UCAG---------UAUCGCGUCCGC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 30007 | 0.73 | 0.46971 |
Target: 5'- gUUGGGGUUggGGUUGUugaAGCGgAGGCGg -3' miRNA: 3'- -AGCCCCGGuuUCAGUA---UCGCgUCCGC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 40946 | 0.73 | 0.479117 |
Target: 5'- gUGGGGCCGAcuUCGUGGCaCAGGUc -3' miRNA: 3'- aGCCCCGGUUucAGUAUCGcGUCCGc -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 63878 | 0.73 | 0.479117 |
Target: 5'- cCGGGGCCGGAGUCGUuaaaCGCcuGCa -3' miRNA: 3'- aGCCCCGGUUUCAGUAuc--GCGucCGc -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 1496 | 0.73 | 0.51664 |
Target: 5'- -gGGGGgCGucGUCGUcgggcuccagcagGGCGCGGGCGc -3' miRNA: 3'- agCCCCgGUuuCAGUA-------------UCGCGUCCGC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 42321 | 0.72 | 0.546284 |
Target: 5'- gUCGGGGCgGGGGgCGUGgggaaucGCGUAGGUGg -3' miRNA: 3'- -AGCCCCGgUUUCaGUAU-------CGCGUCCGC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 59150 | 0.72 | 0.547282 |
Target: 5'- --cGGGCCGGGGUCucgGGUGCGGGaCGc -3' miRNA: 3'- agcCCCGGUUUCAGua-UCGCGUCC-GC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 25420 | 0.72 | 0.547282 |
Target: 5'- -aGGGGCgGuGGUgGU-GCGCGGGCGc -3' miRNA: 3'- agCCCCGgUuUCAgUAuCGCGUCCGC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 2378 | 0.72 | 0.557293 |
Target: 5'- cUCGGGGUCGGGGaUC-UGGCGCauccAGGCc -3' miRNA: 3'- -AGCCCCGGUUUC-AGuAUCGCG----UCCGc -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 109153 | 0.72 | 0.567355 |
Target: 5'- gCGGgugaGGCCAGAGUC--GGCGCGGGg- -3' miRNA: 3'- aGCC----CCGGUUUCAGuaUCGCGUCCgc -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 50514 | 0.71 | 0.577463 |
Target: 5'- -gGGGGCCGAGcaCGaGGCGCuGGGCGa -3' miRNA: 3'- agCCCCGGUUUcaGUaUCGCG-UCCGC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 33994 | 0.71 | 0.577463 |
Target: 5'- cCGGGGCaGGGG-CGggGGCGUGGGCGg -3' miRNA: 3'- aGCCCCGgUUUCaGUa-UCGCGUCCGC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 77136 | 0.71 | 0.58761 |
Target: 5'- cCGGGGCCGuggagGAGcUCGgggGGCGCGuGGCc -3' miRNA: 3'- aGCCCCGGU-----UUC-AGUa--UCGCGU-CCGc -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 2833 | 0.71 | 0.58761 |
Target: 5'- cCGGGGgCGugGAGggg-GGCGCGGGCGc -3' miRNA: 3'- aGCCCCgGU--UUCaguaUCGCGUCCGC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 147685 | 0.71 | 0.597789 |
Target: 5'- -gGGGGCCGGGG-CGcgGGgGCGGGCc -3' miRNA: 3'- agCCCCGGUUUCaGUa-UCgCGUCCGc -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 62256 | 0.71 | 0.618216 |
Target: 5'- cUGGGGCCGcGGaaucCAUGGCaGCAGGgGa -3' miRNA: 3'- aGCCCCGGUuUCa---GUAUCG-CGUCCgC- -5' |
|||||||
5825 | 5' | -56.7 | NC_001806.1 | + | 38510 | 0.71 | 0.618216 |
Target: 5'- gUCGGGGCUggGguGUCGgauauggccucUGGUGguGGCGc -3' miRNA: 3'- -AGCCCCGGuuU--CAGU-----------AUCGCguCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home