miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5825 5' -56.7 NC_001806.1 + 151282 0.69 0.699701
Target:  5'- -gGGGGCCGGGGcCGgggGGCGgC-GGCGg -3'
miRNA:   3'- agCCCCGGUUUCaGUa--UCGC-GuCCGC- -5'
5825 5' -56.7 NC_001806.1 + 150978 0.68 0.777517
Target:  5'- cUCGcGGGCCcacGAGcCGcGGCGCgccAGGCGg -3'
miRNA:   3'- -AGC-CCCGGu--UUCaGUaUCGCG---UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 150877 0.69 0.739357
Target:  5'- cCGcGGGCCAGGGcCcgGGCaCGGGCc -3'
miRNA:   3'- aGC-CCCGGUUUCaGuaUCGcGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 148185 0.67 0.821371
Target:  5'- -gGGGGCgCGGGG-CGUccggcggGGgGCGGGCGg -3'
miRNA:   3'- agCCCCG-GUUUCaGUA-------UCgCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 147731 0.71 0.62845
Target:  5'- aCGGGGCCAcGGcCGc-GCGgGGGCGc -3'
miRNA:   3'- aGCCCCGGUuUCaGUauCGCgUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 147685 0.71 0.597789
Target:  5'- -gGGGGCCGGGG-CGcgGGgGCGGGCc -3'
miRNA:   3'- agCCCCGGUUUCaGUa-UCgCGUCCGc -5'
5825 5' -56.7 NC_001806.1 + 147242 0.67 0.838958
Target:  5'- gUCGGGGCCGAGGaggaagaggCAgaggaggaagaGGCGgAGGCc -3'
miRNA:   3'- -AGCCCCGGUUUCa--------GUa----------UCGCgUCCGc -5'
5825 5' -56.7 NC_001806.1 + 146065 0.7 0.659134
Target:  5'- gUGGcGGCCAGaggccaggucAGUCcgGGCggGCAGGCGc -3'
miRNA:   3'- aGCC-CCGGUU----------UCAGuaUCG--CGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 141919 0.7 0.648916
Target:  5'- -aGGcGCCGAGGUCGc--CGCAGGCGa -3'
miRNA:   3'- agCCcCGGUUUCAGUaucGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 136969 0.69 0.72956
Target:  5'- -gGGGGCCcgcGAG-CGUGGUGCGgucauGGCGg -3'
miRNA:   3'- agCCCCGGu--UUCaGUAUCGCGU-----CCGC- -5'
5825 5' -56.7 NC_001806.1 + 135659 0.69 0.699701
Target:  5'- aUUGGGucGCCAGgcccgcguuGGUCuc-GCGCAGGCGc -3'
miRNA:   3'- -AGCCC--CGGUU---------UCAGuauCGCGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 132706 0.69 0.709722
Target:  5'- -gGGGGCCAGGGUCGUccuccccccgcgAGCugGCccGGCGu -3'
miRNA:   3'- agCCCCGGUUUCAGUA------------UCG--CGu-CCGC- -5'
5825 5' -56.7 NC_001806.1 + 132329 0.67 0.838958
Target:  5'- uUCGGGGaCCu-GGUCGaGGUGUgcgAGGUGg -3'
miRNA:   3'- -AGCCCC-GGuuUCAGUaUCGCG---UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 129719 0.69 0.739357
Target:  5'- -gGGGGCCAcguucuuugggGAGUgGaAGCGCGccuuGGCGg -3'
miRNA:   3'- agCCCCGGU-----------UUCAgUaUCGCGU----CCGC- -5'
5825 5' -56.7 NC_001806.1 + 128886 0.68 0.771912
Target:  5'- -gGGGGCgCGGAGUCGggagauccucugggGGC-CGGGCGu -3'
miRNA:   3'- agCCCCG-GUUUCAGUa-------------UCGcGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 120335 0.66 0.87738
Target:  5'- gUCGGGGgCGgcGGGUCGUccCGCucGGCGa -3'
miRNA:   3'- -AGCCCCgGU--UUCAGUAucGCGu-CCGC- -5'
5825 5' -56.7 NC_001806.1 + 117692 0.67 0.803915
Target:  5'- cUCGGGGCCcGAGcccgCGUcggcccccuccgaGGCcaGUAGGCGg -3'
miRNA:   3'- -AGCCCCGGuUUCa---GUA-------------UCG--CGUCCGC- -5'
5825 5' -56.7 NC_001806.1 + 112556 0.79 0.234319
Target:  5'- aCGGGGCCAAccuGGUCAcGGCGCucgugauGGGCa -3'
miRNA:   3'- aGCCCCGGUU---UCAGUaUCGCG-------UCCGc -5'
5825 5' -56.7 NC_001806.1 + 109535 0.67 0.822226
Target:  5'- cUCGGGaGCCGGGGgagguGCGCcugggccaGGGCGa -3'
miRNA:   3'- -AGCCC-CGGUUUCaguauCGCG--------UCCGC- -5'
5825 5' -56.7 NC_001806.1 + 109153 0.72 0.567355
Target:  5'- gCGGgugaGGCCAGAGUC--GGCGCGGGg- -3'
miRNA:   3'- aGCC----CCGGUUUCAGuaUCGCGUCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.