miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5828 3' -57.3 NC_001806.1 + 37599 0.76 0.304351
Target:  5'- -cCCGCCAGCACCGGGGcccagGGGCUAu-- -3'
miRNA:   3'- caGGUGGUUGUGGCCCU-----UCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 37868 0.71 0.567739
Target:  5'- uGUCCGCUGGCcuCCGGGuGGGUCGGg- -3'
miRNA:   3'- -CAGGUGGUUGu-GGCCCuUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 38069 0.67 0.769179
Target:  5'- cGUCCGCCGcggGCagGCUGGGcuuuGGUCGGUGg -3'
miRNA:   3'- -CAGGUGGU---UG--UGGCCCuu--CCGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 38404 0.68 0.720585
Target:  5'- cUCCGCCGGC-UCGGGggGGUCc--- -3'
miRNA:   3'- cAGGUGGUUGuGGCCCuuCCGGucau -5'
5828 3' -57.3 NC_001806.1 + 38483 0.66 0.835137
Target:  5'- -gUCGCCAugACCGGGcugucggcugccgucGGGGCUGGg- -3'
miRNA:   3'- caGGUGGUugUGGCCC---------------UUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 41111 0.71 0.5376
Target:  5'- -cCCACgGACGCCGGGccGGGCCGa-- -3'
miRNA:   3'- caGGUGgUUGUGGCCCu-UCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 46129 0.69 0.659849
Target:  5'- cUCCGCCAccCGCUGGGuccggaGGGGCCGGa- -3'
miRNA:   3'- cAGGUGGUu-GUGGCCC------UUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 50664 0.68 0.730494
Target:  5'- --gCACCGGCGCCGGGAcgacgcggcGGCCAc-- -3'
miRNA:   3'- cagGUGGUUGUGGCCCUu--------CCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 56833 0.71 0.567739
Target:  5'- -cCCGCCAACACCGccgcGGCCAGg- -3'
miRNA:   3'- caGGUGGUUGUGGCccuuCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 58157 0.69 0.690438
Target:  5'- -aCCGCCGAUACCGcGuuGGGaCCGGUGg -3'
miRNA:   3'- caGGUGGUUGUGGC-CcuUCC-GGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 59864 0.66 0.813829
Target:  5'- -cCCGCaCGACggcccagGCCGGacggacgaGGAGGCCAGUGa -3'
miRNA:   3'- caGGUG-GUUG-------UGGCC--------CUUCCGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 61437 0.66 0.831803
Target:  5'- -gCCGCCAGCGCCGcc-GGGCuCAGg- -3'
miRNA:   3'- caGGUGGUUGUGGCccuUCCG-GUCau -5'
5828 3' -57.3 NC_001806.1 + 64950 0.66 0.831803
Target:  5'- -aCCACCGGCGUCGGcGcccGGGCCGGg- -3'
miRNA:   3'- caGGUGGUUGUGGCC-Cu--UCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 66824 0.68 0.730494
Target:  5'- ---gGCCGGC-CCGGGu-GGCCGGUGu -3'
miRNA:   3'- caggUGGUUGuGGCCCuuCCGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 67206 0.67 0.78782
Target:  5'- gGUCUGCCGGCcuGgCGGGGcgcgcugguGGGCCAGg- -3'
miRNA:   3'- -CAGGUGGUUG--UgGCCCU---------UCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 68568 0.69 0.658825
Target:  5'- uUCCGCCGgccugcGCACCGcGGcggcccuGGGGCCGGUc -3'
miRNA:   3'- cAGGUGGU------UGUGGC-CC-------UUCCGGUCAu -5'
5828 3' -57.3 NC_001806.1 + 71683 0.66 0.82334
Target:  5'- gGUCCAUaAACagGCCGGGucucuGGCCAGc- -3'
miRNA:   3'- -CAGGUGgUUG--UGGCCCuu---CCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 71802 0.72 0.469733
Target:  5'- aGUUCGcgcCCGACcuggaGCCGGGggGGUCGGUAu -3'
miRNA:   3'- -CAGGU---GGUUG-----UGGCCCuuCCGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 73450 0.67 0.805897
Target:  5'- --aCACCcAgGCCGGGguGGCCGGc- -3'
miRNA:   3'- cagGUGGuUgUGGCCCuuCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 75496 0.72 0.479174
Target:  5'- -aCCACCGGCGCgCGGGAaagccucgcGGGCCAc-- -3'
miRNA:   3'- caGGUGGUUGUG-GCCCU---------UCCGGUcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.