miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5828 3' -57.3 NC_001806.1 + 2014 0.66 0.840083
Target:  5'- -gCUGCCGcgACACCGcGGGcccgucggcGGGCCAGUc -3'
miRNA:   3'- caGGUGGU--UGUGGC-CCU---------UCCGGUCAu -5'
5828 3' -57.3 NC_001806.1 + 2117 0.71 0.577885
Target:  5'- cUCCA-CGGCcCCGGcGAAGGCCAGg- -3'
miRNA:   3'- cAGGUgGUUGuGGCC-CUUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 2933 0.66 0.840083
Target:  5'- -gCCGCCuccgGGCgGCCGGGccGGGCCGGg- -3'
miRNA:   3'- caGGUGG----UUG-UGGCCCu-UCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 3371 0.67 0.78782
Target:  5'- -cCgGCCAGCcCCGGGAcGGCCGc-- -3'
miRNA:   3'- caGgUGGUUGuGGCCCUuCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 5577 0.68 0.740317
Target:  5'- -cCCGCCccGACGCCGGcacgccGggGGCCcGUGg -3'
miRNA:   3'- caGGUGG--UUGUGGCC------CuuCCGGuCAU- -5'
5828 3' -57.3 NC_001806.1 + 5654 0.67 0.805897
Target:  5'- aUCUGCCAugGgCGGGGcgcgaGGGCgGGUGg -3'
miRNA:   3'- cAGGUGGUugUgGCCCU-----UCCGgUCAU- -5'
5828 3' -57.3 NC_001806.1 + 6064 0.66 0.848172
Target:  5'- cUCCgcGCCGGCcCCGGGGgcGGGcCCGGg- -3'
miRNA:   3'- cAGG--UGGUUGuGGCCCU--UCC-GGUCau -5'
5828 3' -57.3 NC_001806.1 + 15155 0.68 0.750045
Target:  5'- cGUCC-UCAGCcaaCGGGAAGGCUGGg- -3'
miRNA:   3'- -CAGGuGGUUGug-GCCCUUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 17167 0.66 0.848172
Target:  5'- cUCCAagGGCccccCCGGGAAGGCgGGUc -3'
miRNA:   3'- cAGGUggUUGu---GGCCCUUCCGgUCAu -5'
5828 3' -57.3 NC_001806.1 + 20456 0.67 0.805897
Target:  5'- -aCCGCCGA-ACCGGGAagucgGGGcCCGGg- -3'
miRNA:   3'- caGGUGGUUgUGGCCCU-----UCC-GGUCau -5'
5828 3' -57.3 NC_001806.1 + 21315 0.71 0.577885
Target:  5'- --gCACCGACGCCGGcGAGGacGCCGGg- -3'
miRNA:   3'- cagGUGGUUGUGGCC-CUUC--CGGUCau -5'
5828 3' -57.3 NC_001806.1 + 21497 0.67 0.769179
Target:  5'- -gCCGCCGGCgACCGGGccccggcccGGGGCCGc-- -3'
miRNA:   3'- caGGUGGUUG-UGGCCC---------UUCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 21589 0.67 0.796934
Target:  5'- -cCCGCCGGCccagccGCCGcGGAGacgucgucacGGCCGGUGg -3'
miRNA:   3'- caGGUGGUUG------UGGC-CCUU----------CCGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 22624 0.7 0.629058
Target:  5'- -gCCGCCGccGCACCGGGcGAGcGCgCGGUGc -3'
miRNA:   3'- caGGUGGU--UGUGGCCC-UUC-CG-GUCAU- -5'
5828 3' -57.3 NC_001806.1 + 27285 0.67 0.78782
Target:  5'- -gCCGCCAGCGCggCGGGGcccGGCCAa-- -3'
miRNA:   3'- caGGUGGUUGUG--GCCCUu--CCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 30406 0.66 0.848172
Target:  5'- --gCGCgCGGC-UCGGGggGGCCGGg- -3'
miRNA:   3'- cagGUG-GUUGuGGCCCuuCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 30627 0.68 0.7106
Target:  5'- cUCCGacUCAGgGCCGGGggGGCgCGGc- -3'
miRNA:   3'- cAGGU--GGUUgUGGCCCuuCCG-GUCau -5'
5828 3' -57.3 NC_001806.1 + 32979 0.69 0.658825
Target:  5'- gGUCCGCCGggGCcCCGGGccgggccgccacgGGGGCCGGc- -3'
miRNA:   3'- -CAGGUGGU--UGuGGCCC-------------UUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 35486 0.72 0.498328
Target:  5'- uUCCGCCAACcuccuCCGGaGAGGGCgAGg- -3'
miRNA:   3'- cAGGUGGUUGu----GGCC-CUUCCGgUCau -5'
5828 3' -57.3 NC_001806.1 + 37408 0.66 0.814702
Target:  5'- --aCGCCAGCGucucgUCGGcGGAGGCCAGc- -3'
miRNA:   3'- cagGUGGUUGU-----GGCC-CUUCCGGUCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.