Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5828 | 3' | -57.3 | NC_001806.1 | + | 37599 | 0.76 | 0.304351 |
Target: 5'- -cCCGCCAGCACCGGGGcccagGGGCUAu-- -3' miRNA: 3'- caGGUGGUUGUGGCCCU-----UCCGGUcau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 71802 | 0.72 | 0.469733 |
Target: 5'- aGUUCGcgcCCGACcuggaGCCGGGggGGUCGGUAu -3' miRNA: 3'- -CAGGU---GGUUG-----UGGCCCuuCCGGUCAU- -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 75496 | 0.72 | 0.479174 |
Target: 5'- -aCCACCGGCGCgCGGGAaagccucgcGGGCCAc-- -3' miRNA: 3'- caGGUGGUUGUG-GCCCU---------UCCGGUcau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 35486 | 0.72 | 0.498328 |
Target: 5'- uUCCGCCAACcuccuCCGGaGAGGGCgAGg- -3' miRNA: 3'- cAGGUGGUUGu----GGCC-CUUCCGgUCau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 108606 | 0.71 | 0.527674 |
Target: 5'- -aCCGCUAGCACCaGGGAGGUCAc-- -3' miRNA: 3'- caGGUGGUUGUGGcCCUUCCGGUcau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 121846 | 0.71 | 0.527674 |
Target: 5'- -cCCgACCAGCGCCGGGuGGcGCCuGUGu -3' miRNA: 3'- caGG-UGGUUGUGGCCCuUC-CGGuCAU- -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 41111 | 0.71 | 0.5376 |
Target: 5'- -cCCACgGACGCCGGGccGGGCCGa-- -3' miRNA: 3'- caGGUGgUUGUGGCCCu-UCCGGUcau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 123306 | 0.71 | 0.547591 |
Target: 5'- -cCCugCAgcuGCACCGGGAGGGCguCAGc- -3' miRNA: 3'- caGGugGU---UGUGGCCCUUCCG--GUCau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 81779 | 0.71 | 0.557639 |
Target: 5'- -gCCGCCAAaacgaGCgCGGGggGGCCAa-- -3' miRNA: 3'- caGGUGGUUg----UG-GCCCuuCCGGUcau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 56833 | 0.71 | 0.567739 |
Target: 5'- -cCCGCCAACACCGccgcGGCCAGg- -3' miRNA: 3'- caGGUGGUUGUGGCccuuCCGGUCau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 37868 | 0.71 | 0.567739 |
Target: 5'- uGUCCGCUGGCcuCCGGGuGGGUCGGg- -3' miRNA: 3'- -CAGGUGGUUGu-GGCCCuUCCGGUCau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 2117 | 0.71 | 0.577885 |
Target: 5'- cUCCA-CGGCcCCGGcGAAGGCCAGg- -3' miRNA: 3'- cAGGUgGUUGuGGCC-CUUCCGGUCau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 21315 | 0.71 | 0.577885 |
Target: 5'- --gCACCGACGCCGGcGAGGacGCCGGg- -3' miRNA: 3'- cagGUGGUUGUGGCC-CUUC--CGGUCau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 136318 | 0.7 | 0.598286 |
Target: 5'- aGUCCGCCAcGCGCgUGGagucGAAGGCCAGc- -3' miRNA: 3'- -CAGGUGGU-UGUG-GCC----CUUCCGGUCau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 121329 | 0.7 | 0.608528 |
Target: 5'- -aCCACCGAacaGCuCGcGGAGGaGCCAGUGg -3' miRNA: 3'- caGGUGGUUg--UG-GC-CCUUC-CGGUCAU- -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 22624 | 0.7 | 0.629058 |
Target: 5'- -gCCGCCGccGCACCGGGcGAGcGCgCGGUGc -3' miRNA: 3'- caGGUGGU--UGUGGCCC-UUC-CG-GUCAU- -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 32979 | 0.69 | 0.658825 |
Target: 5'- gGUCCGCCGggGCcCCGGGccgggccgccacgGGGGCCGGc- -3' miRNA: 3'- -CAGGUGGU--UGuGGCCC-------------UUCCGGUCau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 68568 | 0.69 | 0.658825 |
Target: 5'- uUCCGCCGgccugcGCACCGcGGcggcccuGGGGCCGGUc -3' miRNA: 3'- cAGGUGGU------UGUGGC-CC-------UUCCGGUCAu -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 46129 | 0.69 | 0.659849 |
Target: 5'- cUCCGCCAccCGCUGGGuccggaGGGGCCGGa- -3' miRNA: 3'- cAGGUGGUu-GUGGCCC------UUCCGGUCau -5' |
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5828 | 3' | -57.3 | NC_001806.1 | + | 86756 | 0.69 | 0.680278 |
Target: 5'- uGUCgGCCGcCuCCGGGAAaucGGCCAGg- -3' miRNA: 3'- -CAGgUGGUuGuGGCCCUU---CCGGUCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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