miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5828 3' -57.3 NC_001806.1 + 89317 0.66 0.848172
Target:  5'- -gCCGCCGACuuuccuCCGGGGgacagcGGGCCGc-- -3'
miRNA:   3'- caGGUGGUUGu-----GGCCCU------UCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 21315 0.71 0.577885
Target:  5'- --gCACCGACGCCGGcGAGGacGCCGGg- -3'
miRNA:   3'- cagGUGGUUGUGGCC-CUUC--CGGUCau -5'
5828 3' -57.3 NC_001806.1 + 136318 0.7 0.598286
Target:  5'- aGUCCGCCAcGCGCgUGGagucGAAGGCCAGc- -3'
miRNA:   3'- -CAGGUGGU-UGUG-GCC----CUUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 121329 0.7 0.608528
Target:  5'- -aCCACCGAacaGCuCGcGGAGGaGCCAGUGg -3'
miRNA:   3'- caGGUGGUUg--UG-GC-CCUUC-CGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 22624 0.7 0.629058
Target:  5'- -gCCGCCGccGCACCGGGcGAGcGCgCGGUGc -3'
miRNA:   3'- caGGUGGU--UGUGGCCC-UUC-CG-GUCAU- -5'
5828 3' -57.3 NC_001806.1 + 32979 0.69 0.658825
Target:  5'- gGUCCGCCGggGCcCCGGGccgggccgccacgGGGGCCGGc- -3'
miRNA:   3'- -CAGGUGGU--UGuGGCCC-------------UUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 68568 0.69 0.658825
Target:  5'- uUCCGCCGgccugcGCACCGcGGcggcccuGGGGCCGGUc -3'
miRNA:   3'- cAGGUGGU------UGUGGC-CC-------UUCCGGUCAu -5'
5828 3' -57.3 NC_001806.1 + 46129 0.69 0.659849
Target:  5'- cUCCGCCAccCGCUGGGuccggaGGGGCCGGa- -3'
miRNA:   3'- cAGGUGGUu-GUGGCCC------UUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 86756 0.69 0.680278
Target:  5'- uGUCgGCCGcCuCCGGGAAaucGGCCAGg- -3'
miRNA:   3'- -CAGgUGGUuGuGGCCCUU---CCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 2117 0.71 0.577885
Target:  5'- cUCCA-CGGCcCCGGcGAAGGCCAGg- -3'
miRNA:   3'- cAGGUgGUUGuGGCC-CUUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 56833 0.71 0.567739
Target:  5'- -cCCGCCAACACCGccgcGGCCAGg- -3'
miRNA:   3'- caGGUGGUUGUGGCccuuCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 37868 0.71 0.567739
Target:  5'- uGUCCGCUGGCcuCCGGGuGGGUCGGg- -3'
miRNA:   3'- -CAGGUGGUUGu-GGCCCuUCCGGUCau -5'
5828 3' -57.3 NC_001806.1 + 71802 0.72 0.469733
Target:  5'- aGUUCGcgcCCGACcuggaGCCGGGggGGUCGGUAu -3'
miRNA:   3'- -CAGGU---GGUUG-----UGGCCCuuCCGGUCAU- -5'
5828 3' -57.3 NC_001806.1 + 75496 0.72 0.479174
Target:  5'- -aCCACCGGCGCgCGGGAaagccucgcGGGCCAc-- -3'
miRNA:   3'- caGGUGGUUGUG-GCCCU---------UCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 35486 0.72 0.498328
Target:  5'- uUCCGCCAACcuccuCCGGaGAGGGCgAGg- -3'
miRNA:   3'- cAGGUGGUUGu----GGCC-CUUCCGgUCau -5'
5828 3' -57.3 NC_001806.1 + 121846 0.71 0.527674
Target:  5'- -cCCgACCAGCGCCGGGuGGcGCCuGUGu -3'
miRNA:   3'- caGG-UGGUUGUGGCCCuUC-CGGuCAU- -5'
5828 3' -57.3 NC_001806.1 + 108606 0.71 0.527674
Target:  5'- -aCCGCUAGCACCaGGGAGGUCAc-- -3'
miRNA:   3'- caGGUGGUUGUGGcCCUUCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 41111 0.71 0.5376
Target:  5'- -cCCACgGACGCCGGGccGGGCCGa-- -3'
miRNA:   3'- caGGUGgUUGUGGCCCu-UCCGGUcau -5'
5828 3' -57.3 NC_001806.1 + 123306 0.71 0.547591
Target:  5'- -cCCugCAgcuGCACCGGGAGGGCguCAGc- -3'
miRNA:   3'- caGGugGU---UGUGGCCCUUCCG--GUCau -5'
5828 3' -57.3 NC_001806.1 + 81779 0.71 0.557639
Target:  5'- -gCCGCCAAaacgaGCgCGGGggGGCCAa-- -3'
miRNA:   3'- caGGUGGUUg----UG-GCCCuuCCGGUcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.