miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5828 5' -59.4 NC_001806.1 + 107031 0.83 0.089879
Target:  5'- gGUugG-CCgcCCGCGGGGCCGCGGGCu -3'
miRNA:   3'- aCAugUuGGa-GGCGCCCCGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 2650 0.78 0.178755
Target:  5'- aGUA-GGCCUCCaggGCGGcGGCCGCGGGCg -3'
miRNA:   3'- aCAUgUUGGAGG---CGCC-CCGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 21886 0.77 0.222624
Target:  5'- --cGCGGCCUCCGCGGGccgcaucgagcGCCGcCGGGCc -3'
miRNA:   3'- acaUGUUGGAGGCGCCC-----------CGGC-GUCUG- -5'
5828 5' -59.4 NC_001806.1 + 66842 0.76 0.256726
Target:  5'- gUGUGCGccGCCUCC-UGGGGCC-CGGGCa -3'
miRNA:   3'- -ACAUGU--UGGAGGcGCCCCGGcGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 136671 0.75 0.275326
Target:  5'- cUGUACcggcgAACCagCCGuUGGGGCUGCAGACc -3'
miRNA:   3'- -ACAUG-----UUGGa-GGC-GCCCCGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 65190 0.74 0.337545
Target:  5'- --gACGAaCUCCGCGGGGCCGacuGGAUc -3'
miRNA:   3'- acaUGUUgGAGGCGCCCCGGCg--UCUG- -5'
5828 5' -59.4 NC_001806.1 + 89267 0.73 0.376298
Target:  5'- --gGCuGgCUCCGCGaGGGCCgGCGGGCg -3'
miRNA:   3'- acaUGuUgGAGGCGC-CCCGG-CGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 114067 0.72 0.392617
Target:  5'- gGUGCccGCCUucUCGCGGGGCCGCuGcuGCa -3'
miRNA:   3'- aCAUGu-UGGA--GGCGCCCCGGCGuC--UG- -5'
5828 5' -59.4 NC_001806.1 + 24126 0.72 0.400948
Target:  5'- ----uGGCCUUCGcCGGGGCCGUGGAg -3'
miRNA:   3'- acaugUUGGAGGC-GCCCCGGCGUCUg -5'
5828 5' -59.4 NC_001806.1 + 4440 0.72 0.435367
Target:  5'- cGgggGCGGCgUCCGCccgGGGGCUGCcGGCg -3'
miRNA:   3'- aCa--UGUUGgAGGCG---CCCCGGCGuCUG- -5'
5828 5' -59.4 NC_001806.1 + 3032 0.72 0.435367
Target:  5'- gGUGCGcugGCCgccgCCGCcagcaGGGGgCGCAGGCu -3'
miRNA:   3'- aCAUGU---UGGa---GGCG-----CCCCgGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 73041 0.71 0.444236
Target:  5'- --gGCAaaACCcCCGuCGGGGCCGCGGuCc -3'
miRNA:   3'- acaUGU--UGGaGGC-GCCCCGGCGUCuG- -5'
5828 5' -59.4 NC_001806.1 + 50889 0.71 0.444236
Target:  5'- cUGgGCGGaCUCCGCGcGGCCGCGGAg -3'
miRNA:   3'- -ACaUGUUgGAGGCGCcCCGGCGUCUg -5'
5828 5' -59.4 NC_001806.1 + 132644 0.71 0.444236
Target:  5'- --cGgGACCUggugCGCGGGGCCGCGGcCg -3'
miRNA:   3'- acaUgUUGGAg---GCGCCCCGGCGUCuG- -5'
5828 5' -59.4 NC_001806.1 + 38799 0.71 0.453205
Target:  5'- cGUuCcGCUUCCGCGGGGaCC-CGGGCg -3'
miRNA:   3'- aCAuGuUGGAGGCGCCCC-GGcGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 65652 0.71 0.459541
Target:  5'- --gGCGGCCUCCcccuggguggcugcGCuGGGGCCGCcGGCc -3'
miRNA:   3'- acaUGUUGGAGG--------------CG-CCCCGGCGuCUG- -5'
5828 5' -59.4 NC_001806.1 + 86966 0.71 0.462272
Target:  5'- --cACGGCCUCCuCGGGGCUGCucuGGg -3'
miRNA:   3'- acaUGUUGGAGGcGCCCCGGCGu--CUg -5'
5828 5' -59.4 NC_001806.1 + 2011 0.71 0.484411
Target:  5'- cGUGCuGCCgcgacaCCGCGGGcccgucggcgggccaGUCGCAGGCg -3'
miRNA:   3'- aCAUGuUGGa-----GGCGCCC---------------CGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 3074 0.7 0.498503
Target:  5'- uUGUcaaACAGCaggUCCGCGGcggcggcGGCCGCGGAg -3'
miRNA:   3'- -ACA---UGUUGg--AGGCGCC-------CCGGCGUCUg -5'
5828 5' -59.4 NC_001806.1 + 95035 0.7 0.499449
Target:  5'- aGga-GACCgCCGCGGuGGCCGUGGAa -3'
miRNA:   3'- aCaugUUGGaGGCGCC-CCGGCGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.