miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5828 5' -59.4 NC_001806.1 + 1319 0.66 0.755397
Target:  5'- aGUccACAACUucccgCCGCGGGGgCGUGGcCa -3'
miRNA:   3'- aCA--UGUUGGa----GGCGCCCCgGCGUCuG- -5'
5828 5' -59.4 NC_001806.1 + 2011 0.71 0.484411
Target:  5'- cGUGCuGCCgcgacaCCGCGGGcccgucggcgggccaGUCGCAGGCg -3'
miRNA:   3'- aCAUGuUGGa-----GGCGCCC---------------CGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 2650 0.78 0.178755
Target:  5'- aGUA-GGCCUCCaggGCGGcGGCCGCGGGCg -3'
miRNA:   3'- aCAUgUUGGAGG---CGCC-CCGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 3032 0.72 0.435367
Target:  5'- gGUGCGcugGCCgccgCCGCcagcaGGGGgCGCAGGCu -3'
miRNA:   3'- aCAUGU---UGGa---GGCG-----CCCCgGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 3074 0.7 0.498503
Target:  5'- uUGUcaaACAGCaggUCCGCGGcggcggcGGCCGCGGAg -3'
miRNA:   3'- -ACA---UGUUGg--AGGCGCC-------CCGGCGUCUg -5'
5828 5' -59.4 NC_001806.1 + 3303 0.68 0.627366
Target:  5'- cGUGCGGCggCgGCGGGGaaGCGGGg -3'
miRNA:   3'- aCAUGUUGgaGgCGCCCCggCGUCUg -5'
5828 5' -59.4 NC_001806.1 + 4166 0.66 0.736378
Target:  5'- cGUACAGCaC-CCGCcccGGGGgCGgGGGCc -3'
miRNA:   3'- aCAUGUUG-GaGGCG---CCCCgGCgUCUG- -5'
5828 5' -59.4 NC_001806.1 + 4360 0.7 0.508952
Target:  5'- -aUGCGGC--CCGCGGaGGCCGCGGGg -3'
miRNA:   3'- acAUGUUGgaGGCGCC-CCGGCGUCUg -5'
5828 5' -59.4 NC_001806.1 + 4440 0.72 0.435367
Target:  5'- cGgggGCGGCgUCCGCccgGGGGCUGCcGGCg -3'
miRNA:   3'- aCa--UGUUGgAGGCG---CCCCGGCGuCUG- -5'
5828 5' -59.4 NC_001806.1 + 4643 0.7 0.499449
Target:  5'- cGUgACGACguCUCCGCGGcggcugGGCCgGCGGGCg -3'
miRNA:   3'- aCA-UGUUG--GAGGCGCC------CCGG-CGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 9325 0.66 0.773996
Target:  5'- --gGCGACCgaCGUGGGGCCuCGGGa -3'
miRNA:   3'- acaUGUUGGagGCGCCCCGGcGUCUg -5'
5828 5' -59.4 NC_001806.1 + 11866 0.7 0.518531
Target:  5'- gGUAUAcgcucgccgggGCCagaCGCGGGGCCGaAGACg -3'
miRNA:   3'- aCAUGU-----------UGGag-GCGCCCCGGCgUCUG- -5'
5828 5' -59.4 NC_001806.1 + 12372 0.67 0.677502
Target:  5'- -aUACcaGACUgaCCGUGGGGCCaCGGACa -3'
miRNA:   3'- acAUG--UUGGa-GGCGCCCCGGcGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 19354 0.68 0.664512
Target:  5'- ----aAGCCUCCGgGGGGCCcuacggccaccgauGCGGGg -3'
miRNA:   3'- acaugUUGGAGGCgCCCCGG--------------CGUCUg -5'
5828 5' -59.4 NC_001806.1 + 21503 0.68 0.647463
Target:  5'- --gGCGACCgggccCCGgccCGGGGCCGCGaACg -3'
miRNA:   3'- acaUGUUGGa----GGC---GCCCCGGCGUcUG- -5'
5828 5' -59.4 NC_001806.1 + 21594 0.69 0.607283
Target:  5'- cGgccCAGCCgCCGCGGagacgucgucacGGCCGguGGCg -3'
miRNA:   3'- aCau-GUUGGaGGCGCC------------CCGGCguCUG- -5'
5828 5' -59.4 NC_001806.1 + 21886 0.77 0.222624
Target:  5'- --cGCGGCCUCCGCGGGccgcaucgagcGCCGcCGGGCc -3'
miRNA:   3'- acaUGUUGGAGGCGCCC-----------CGGC-GUCUG- -5'
5828 5' -59.4 NC_001806.1 + 22661 0.69 0.586273
Target:  5'- gGUACGGCg-CCGCGGGgauccucGCCGCccugGGGCg -3'
miRNA:   3'- aCAUGUUGgaGGCGCCC-------CGGCG----UCUG- -5'
5828 5' -59.4 NC_001806.1 + 23148 0.68 0.627366
Target:  5'- ---cCGAgCUCCGCGGccgccgccGCCGCGGACc -3'
miRNA:   3'- acauGUUgGAGGCGCCc-------CGGCGUCUG- -5'
5828 5' -59.4 NC_001806.1 + 23261 0.66 0.764753
Target:  5'- --cGCcGCCUCCGCcGcGCCGCGGGa -3'
miRNA:   3'- acaUGuUGGAGGCGcCcCGGCGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.