miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5830 5' -53.2 NC_001806.1 + 27061 0.66 0.979516
Target:  5'- cUGGGGCccgaggCcCGUGCCCGggcCCUGGc -3'
miRNA:   3'- cAUCUCGcaa---GuGCAUGGGCa--GGACC- -5'
5830 5' -53.2 NC_001806.1 + 93135 0.66 0.974673
Target:  5'- --uGGGCGgcaaaaaCGCGUGCCCGcUCCUu- -3'
miRNA:   3'- cauCUCGCaa-----GUGCAUGGGC-AGGAcc -5'
5830 5' -53.2 NC_001806.1 + 61548 0.66 0.974673
Target:  5'- -gGGGGC-UUgGCGUGCCCGcCgaGGu -3'
miRNA:   3'- caUCUCGcAAgUGCAUGGGCaGgaCC- -5'
5830 5' -53.2 NC_001806.1 + 132560 0.66 0.971961
Target:  5'- -cGGGGgGgacccgUCcCGUACuuugCCGUCCUGGg -3'
miRNA:   3'- caUCUCgCa-----AGuGCAUG----GGCAGGACC- -5'
5830 5' -53.2 NC_001806.1 + 124813 0.66 0.969046
Target:  5'- gGUGGuuAGCGUgUACGUcgcCCCGagCCUGGg -3'
miRNA:   3'- -CAUC--UCGCAaGUGCAu--GGGCa-GGACC- -5'
5830 5' -53.2 NC_001806.1 + 93629 0.67 0.962581
Target:  5'- --cGGGCGUUcCACGgggaugACCCGUUUgGGg -3'
miRNA:   3'- cauCUCGCAA-GUGCa-----UGGGCAGGaCC- -5'
5830 5' -53.2 NC_001806.1 + 75213 0.67 0.959019
Target:  5'- gGUGGAuGCGgccgUGCGggcgcACCgCGUCCUGGu -3'
miRNA:   3'- -CAUCU-CGCaa--GUGCa----UGG-GCAGGACC- -5'
5830 5' -53.2 NC_001806.1 + 119864 0.67 0.951212
Target:  5'- cGUGGGGCGggCgACGcGCCCGcCCUc- -3'
miRNA:   3'- -CAUCUCGCaaG-UGCaUGGGCaGGAcc -5'
5830 5' -53.2 NC_001806.1 + 14825 0.68 0.946959
Target:  5'- cUAGGGUGUgUGCGUcGCCCGcgUCUGGa -3'
miRNA:   3'- cAUCUCGCAaGUGCA-UGGGCa-GGACC- -5'
5830 5' -53.2 NC_001806.1 + 87881 0.69 0.910446
Target:  5'- ---cGGcCGUUCAugcggcCGUACCCGUCCaGGg -3'
miRNA:   3'- caucUC-GCAAGU------GCAUGGGCAGGaCC- -5'
5830 5' -53.2 NC_001806.1 + 121405 0.69 0.904262
Target:  5'- -cGGAGcCGggCGCGUgcugcgccuuggGCCCGggggCCUGGu -3'
miRNA:   3'- caUCUC-GCaaGUGCA------------UGGGCa---GGACC- -5'
5830 5' -53.2 NC_001806.1 + 113383 0.69 0.897839
Target:  5'- -cGGcGGCGUUC-CGggacGCCCGgggCCUGGa -3'
miRNA:   3'- caUC-UCGCAAGuGCa---UGGGCa--GGACC- -5'
5830 5' -53.2 NC_001806.1 + 65445 0.7 0.884293
Target:  5'- -gGGAGCGggggaugcCGCGgcCCCcggGUCCUGGg -3'
miRNA:   3'- caUCUCGCaa------GUGCauGGG---CAGGACC- -5'
5830 5' -53.2 NC_001806.1 + 22383 0.71 0.846544
Target:  5'- cGUGGcGCGggC-CGUGCCCcaCCUGGg -3'
miRNA:   3'- -CAUCuCGCaaGuGCAUGGGcaGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.