miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5835 3' -65.8 NC_001806.1 + 7258 0.68 0.393154
Target:  5'- aUCCCCAggacaccgcguGUUCCccgGGaGCCCCGGGU-UCCg -3'
miRNA:   3'- -GGGGGU-----------CGAGG---UC-CGGGGCCCGcAGG- -5'
5835 3' -65.8 NC_001806.1 + 7386 0.67 0.450345
Target:  5'- aCCCCGGuCUcCCAGGgagccccggucuCCCCGGGag-CCc -3'
miRNA:   3'- gGGGGUC-GA-GGUCC------------GGGGCCCgcaGG- -5'
5835 3' -65.8 NC_001806.1 + 7456 0.66 0.518162
Target:  5'- aCCCCCcgcgaaccacguacGGCUCgCGGGUcuguauagCCCGGGCa--- -3'
miRNA:   3'- -GGGGG--------------UCGAG-GUCCG--------GGGCCCGcagg -5'
5835 3' -65.8 NC_001806.1 + 7792 0.68 0.396294
Target:  5'- gCCCCCGGCUacagGGGCCauguUGGGCcgccacgcgcggcugGUCCa -3'
miRNA:   3'- -GGGGGUCGAgg--UCCGGg---GCCCG---------------CAGG- -5'
5835 3' -65.8 NC_001806.1 + 12320 0.72 0.210352
Target:  5'- uCCUCCacuacgccgucgGGCcCCaAGGCCCC-GGCGUCCa -3'
miRNA:   3'- -GGGGG------------UCGaGG-UCCGGGGcCCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 12427 0.68 0.385376
Target:  5'- gCCCaCgAGCaCCAGGCCCugcaaCGGGCGg-- -3'
miRNA:   3'- -GGG-GgUCGaGGUCCGGG-----GCCCGCagg -5'
5835 3' -65.8 NC_001806.1 + 16696 0.68 0.362661
Target:  5'- uCCUCCGGauaggCCAcgucGUCCgGGGCGUCCu -3'
miRNA:   3'- -GGGGGUCga---GGUc---CGGGgCCCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 17054 0.66 0.520891
Target:  5'- aCCCCGaacgaCGGGCCCCGGG-GUUUu -3'
miRNA:   3'- gGGGGUcgag-GUCCGGGGCCCgCAGG- -5'
5835 3' -65.8 NC_001806.1 + 17992 0.74 0.158677
Target:  5'- cCCaCCCAGCUaccCCAGGCCCCcuuacgacGucccauccggugcGGCGUCCg -3'
miRNA:   3'- -GG-GGGUCGA---GGUCCGGGG--------C-------------CCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 18441 0.7 0.293844
Target:  5'- gCCCCAGaaUCGgauGGgCCCGGGCGuUCCa -3'
miRNA:   3'- gGGGGUCgaGGU---CCgGGGCCCGC-AGG- -5'
5835 3' -65.8 NC_001806.1 + 20162 0.67 0.458885
Target:  5'- cCCCCCGccGC-CCGGGCccgccCCCGGG-G-CCg -3'
miRNA:   3'- -GGGGGU--CGaGGUCCG-----GGGCCCgCaGG- -5'
5835 3' -65.8 NC_001806.1 + 20290 0.68 0.401033
Target:  5'- -aCCCGGCggCCccGCCCCcuugGGGCgGUCCc -3'
miRNA:   3'- ggGGGUCGa-GGucCGGGG----CCCG-CAGG- -5'
5835 3' -65.8 NC_001806.1 + 20365 0.66 0.502809
Target:  5'- gCCgCCC-GCcgUCCcguuGGUCCC-GGCGUCCg -3'
miRNA:   3'- -GG-GGGuCG--AGGu---CCGGGGcCCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 20649 0.7 0.281366
Target:  5'- gCCgCGGC-CaCGGGCCCCcGGCGUgCCg -3'
miRNA:   3'- gGGgGUCGaG-GUCCGGGGcCCGCA-GG- -5'
5835 3' -65.8 NC_001806.1 + 21135 0.77 0.105658
Target:  5'- gCCCCGGCUCCccGGGCCCCaccgacGGGcCG-CCg -3'
miRNA:   3'- gGGGGUCGAGG--UCCGGGG------CCC-GCaGG- -5'
5835 3' -65.8 NC_001806.1 + 21497 0.72 0.235646
Target:  5'- gCCgCCGGCgaCCGGGCCCCGGccCGgggCCg -3'
miRNA:   3'- -GGgGGUCGa-GGUCCGGGGCCc-GCa--GG- -5'
5835 3' -65.8 NC_001806.1 + 21836 0.69 0.320084
Target:  5'- cCCCCCcuCUCCgAGgccgcgcccaaGCCCCGGGCGg-- -3'
miRNA:   3'- -GGGGGucGAGG-UC-----------CGGGGCCCGCagg -5'
5835 3' -65.8 NC_001806.1 + 21890 0.68 0.369377
Target:  5'- gCCUCCgcgggccgcaucgAGCgccgCCGGGCCCgCGcGGCGguggCCg -3'
miRNA:   3'- -GGGGG-------------UCGa---GGUCCGGG-GC-CCGCa---GG- -5'
5835 3' -65.8 NC_001806.1 + 22059 0.72 0.205582
Target:  5'- -gCCCGGCgCCGGGCCCCcgcccccgGGGCGggugCUg -3'
miRNA:   3'- ggGGGUCGaGGUCCGGGG--------CCCGCa---GG- -5'
5835 3' -65.8 NC_001806.1 + 22103 0.66 0.511817
Target:  5'- gCCUgGGCgacagccgcCCGGGCCUCugggGGGCGcCCg -3'
miRNA:   3'- gGGGgUCGa--------GGUCCGGGG----CCCGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.