miRNA display CGI


Results 1 - 20 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5835 3' -65.8 NC_001806.1 + 291 0.67 0.425263
Target:  5'- uCCCCCcGCUCCcgcGGCCCCGccccccaCGcCCg -3'
miRNA:   3'- -GGGGGuCGAGGu--CCGGGGCcc-----GCaGG- -5'
5835 3' -65.8 NC_001806.1 + 714 0.79 0.071204
Target:  5'- cUCCCCGGCcCCAGcccuCCCCGGcGCGUCCc -3'
miRNA:   3'- -GGGGGUCGaGGUCc---GGGGCC-CGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 1363 0.7 0.287552
Target:  5'- gCCCCCAGCaccUCCAcGGCCCCcGcCG-CCg -3'
miRNA:   3'- -GGGGGUCG---AGGU-CCGGGGcCcGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 1435 0.68 0.369377
Target:  5'- aUCCCgGGCggcgCCggcggcaGGGcCCCCGGGcCGUCg -3'
miRNA:   3'- -GGGGgUCGa---GG-------UCC-GGGGCCC-GCAGg -5'
5835 3' -65.8 NC_001806.1 + 1666 0.68 0.393154
Target:  5'- uCCUCgCAGaagUCCGGcGCgCCGGGCG-CCa -3'
miRNA:   3'- -GGGG-GUCg--AGGUC-CGgGGCCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 2107 0.73 0.191833
Target:  5'- gCCCCAGaaaCUCCAcGGCCCC-GGCGaaggCCa -3'
miRNA:   3'- gGGGGUC---GAGGU-CCGGGGcCCGCa---GG- -5'
5835 3' -65.8 NC_001806.1 + 2296 0.66 0.485006
Target:  5'- aCUCCGGCggcccccCCgAGGCCCCGccgccGGCcagGUCCu -3'
miRNA:   3'- gGGGGUCGa------GG-UCCGGGGC-----CCG---CAGG- -5'
5835 3' -65.8 NC_001806.1 + 2655 0.69 0.348042
Target:  5'- gCCUCCAGggCgGcGGCCgCGGGCG-CCg -3'
miRNA:   3'- -GGGGGUCgaGgU-CCGGgGCCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 2710 0.67 0.450345
Target:  5'- gCCgCCAGCcgcccagggggUCgGGGCCCUcGGCGggCCg -3'
miRNA:   3'- -GGgGGUCG-----------AGgUCCGGGGcCCGCa-GG- -5'
5835 3' -65.8 NC_001806.1 + 2930 0.66 0.520891
Target:  5'- gCCgCCGcCUCCGGGCggCCGGGCcgggCCg -3'
miRNA:   3'- -GGgGGUcGAGGUCCGg-GGCCCGca--GG- -5'
5835 3' -65.8 NC_001806.1 + 3152 0.7 0.281366
Target:  5'- gCCCCGGCgaCCAGGCUCaCGGcGCGcacggcggCCa -3'
miRNA:   3'- gGGGGUCGa-GGUCCGGG-GCC-CGCa-------GG- -5'
5835 3' -65.8 NC_001806.1 + 3368 0.69 0.355298
Target:  5'- gCCCCGGC-Ca--GCCCCGGGaCGgCCg -3'
miRNA:   3'- gGGGGUCGaGgucCGGGGCCC-GCaGG- -5'
5835 3' -65.8 NC_001806.1 + 3409 0.68 0.40821
Target:  5'- gCCCUCGGCcagcgccUCCAGGaUCCCGcggcaGGCGgCCa -3'
miRNA:   3'- -GGGGGUCG-------AGGUCC-GGGGC-----CCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 3987 0.66 0.476218
Target:  5'- aCCCCAGgcCUCCGcGUCCgGGGUGUa- -3'
miRNA:   3'- gGGGGUC--GAGGUcCGGGgCCCGCAgg -5'
5835 3' -65.8 NC_001806.1 + 4051 0.69 0.325538
Target:  5'- uCgCCCAGCUCgGGcGCCCacacggccgccgGGGCGcCCg -3'
miRNA:   3'- -GgGGGUCGAGgUC-CGGGg-----------CCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 4120 0.66 0.476218
Target:  5'- gCCUCgGGCgccccCCAGaGgCCCGGGCGgCUg -3'
miRNA:   3'- -GGGGgUCGa----GGUC-CgGGGCCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 4345 0.68 0.396294
Target:  5'- -gCCCGGCggcgCUcgaugcggcccgcggAGGCCgCGGGgGUCCu -3'
miRNA:   3'- ggGGGUCGa---GG---------------UCCGGgGCCCgCAGG- -5'
5835 3' -65.8 NC_001806.1 + 4740 0.69 0.355298
Target:  5'- gCCCCGGg-CCGGGgCCCGGucgccggcgGCGUCg -3'
miRNA:   3'- gGGGGUCgaGGUCCgGGGCC---------CGCAGg -5'
5835 3' -65.8 NC_001806.1 + 6058 0.67 0.458885
Target:  5'- -gCCCGaCUCCGcgccGGCCCCGGGgGcgggCCc -3'
miRNA:   3'- ggGGGUcGAGGU----CCGGGGCCCgCa---GG- -5'
5835 3' -65.8 NC_001806.1 + 7023 0.7 0.281366
Target:  5'- aCCCCCGGCcCCAGuugggCCGGGCGaCCc -3'
miRNA:   3'- -GGGGGUCGaGGUCcgg--GGCCCGCaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.