Results 1 - 20 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5835 | 3' | -65.8 | NC_001806.1 | + | 26412 | 0.86 | 0.022263 |
Target: 5'- gCCCCCGGCcgcCCGGGCCCaCGGGCG-CCg -3' miRNA: 3'- -GGGGGUCGa--GGUCCGGG-GCCCGCaGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 30172 | 0.81 | 0.055456 |
Target: 5'- gCCCCCcGCcCCGGGCCCCccGCGUCCg -3' miRNA: 3'- -GGGGGuCGaGGUCCGGGGccCGCAGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 135398 | 0.79 | 0.070675 |
Target: 5'- gCUCCCAgaggcgcgacaggcGCUCCAGGUCCUGGGCGUa- -3' miRNA: 3'- -GGGGGU--------------CGAGGUCCGGGGCCCGCAgg -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 106688 | 0.79 | 0.071204 |
Target: 5'- cCCCCCgggGGCUcuucCCGGGcCCCCGGGCGgCCc -3' miRNA: 3'- -GGGGG---UCGA----GGUCC-GGGGCCCGCaGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 81267 | 0.79 | 0.071204 |
Target: 5'- uCCCCgGGcCUCacgGGGUCCCGGGCGUCg -3' miRNA: 3'- -GGGGgUC-GAGg--UCCGGGGCCCGCAGg -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 714 | 0.79 | 0.071204 |
Target: 5'- cUCCCCGGCcCCAGcccuCCCCGGcGCGUCCc -3' miRNA: 3'- -GGGGGUCGaGGUCc---GGGGCC-CGCAGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 87425 | 0.78 | 0.084702 |
Target: 5'- cCCCCCGGCgccCCuaaaucGCCCCuGGGUGUCCg -3' miRNA: 3'- -GGGGGUCGa--GGuc----CGGGG-CCCGCAGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 22158 | 0.78 | 0.088986 |
Target: 5'- aCgCCGGUUCgAGGCCUCGGGCGcCCc -3' miRNA: 3'- gGgGGUCGAGgUCCGGGGCCCGCaGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 41356 | 0.77 | 0.095801 |
Target: 5'- cCCCCCGGCaUCCAGGCCgCCaggGGGCaUCa -3' miRNA: 3'- -GGGGGUCG-AGGUCCGG-GG---CCCGcAGg -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 21135 | 0.77 | 0.105658 |
Target: 5'- gCCCCGGCUCCccGGGCCCCaccgacGGGcCG-CCg -3' miRNA: 3'- gGGGGUCGAGG--UCCGGGG------CCC-GCaGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 60307 | 0.75 | 0.128288 |
Target: 5'- aCCCCCAGUUCCuGGCCCUcuuUGUCCg -3' miRNA: 3'- -GGGGGUCGAGGuCCGGGGcccGCAGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 30272 | 0.75 | 0.131414 |
Target: 5'- gCCCCCGcGC-CCcGGCCCCcgGGGCGgagCCg -3' miRNA: 3'- -GGGGGU-CGaGGuCCGGGG--CCCGCa--GG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 30123 | 0.75 | 0.13461 |
Target: 5'- cCCCCCGGCcucUCCccacAGGCCCCccgcGGCGcCCa -3' miRNA: 3'- -GGGGGUCG---AGG----UCCGGGGc---CCGCaGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 50936 | 0.74 | 0.151687 |
Target: 5'- cUCCUCAGCgccCCGGGCCCCc-GUGUCCg -3' miRNA: 3'- -GGGGGUCGa--GGUCCGGGGccCGCAGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 17992 | 0.74 | 0.158677 |
Target: 5'- cCCaCCCAGCUaccCCAGGCCCCcuuacgacGucccauccggugcGGCGUCCg -3' miRNA: 3'- -GG-GGGUCGA---GGUCCGGGG--------C-------------CCGCAGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 32972 | 0.74 | 0.162856 |
Target: 5'- cCCCUUGGgUCCgccgGGGCCCCGGGCcgggCCg -3' miRNA: 3'- -GGGGGUCgAGG----UCCGGGGCCCGca--GG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 77435 | 0.74 | 0.17476 |
Target: 5'- gCCCUAGacgCCc-GCgCCCGGGCGUCCg -3' miRNA: 3'- gGGGGUCga-GGucCG-GGGCCCGCAGG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 33031 | 0.73 | 0.178897 |
Target: 5'- aCCCCgAGUguucaUCuCAGGCCCCGGGcCGggaacCCg -3' miRNA: 3'- -GGGGgUCG-----AG-GUCCGGGGCCC-GCa----GG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 30221 | 0.73 | 0.187432 |
Target: 5'- gCCCCCGcGCggCCGuGGCCCCGuGCGUgCg -3' miRNA: 3'- -GGGGGU-CGa-GGU-CCGGGGCcCGCAgG- -5' |
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5835 | 3' | -65.8 | NC_001806.1 | + | 23448 | 0.73 | 0.191833 |
Target: 5'- cCCgCCCAGCcCgCGGcGCCCCGGGcCG-CCg -3' miRNA: 3'- -GG-GGGUCGaG-GUC-CGGGGCCC-GCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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