miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5835 3' -65.8 NC_001806.1 + 105676 0.66 0.485006
Target:  5'- aCCCCCAaGUUCgggugaAGGCCCaGGGCucgcagCCa -3'
miRNA:   3'- -GGGGGU-CGAGg-----UCCGGGgCCCGca----GG- -5'
5835 3' -65.8 NC_001806.1 + 73104 0.66 0.476218
Target:  5'- cCCCCCGaCccggCCGGGCCgCCGGuCG-CCg -3'
miRNA:   3'- -GGGGGUcGa---GGUCCGG-GGCCcGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 56526 0.66 0.485006
Target:  5'- gCCCgGGC-CCGGcguuCCCCGGGCauGUUCu -3'
miRNA:   3'- gGGGgUCGaGGUCc---GGGGCCCG--CAGG- -5'
5835 3' -65.8 NC_001806.1 + 143399 0.66 0.485006
Target:  5'- cUCCCCGGCggCCGGGUCgCGGcucuuacgaGCGgCCc -3'
miRNA:   3'- -GGGGGUCGa-GGUCCGGgGCC---------CGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 67775 0.66 0.501016
Target:  5'- gCCUCCGGUggguuguguuggCCGacuGG-CCCGGcGCGUCCg -3'
miRNA:   3'- -GGGGGUCGa-----------GGU---CCgGGGCC-CGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 149767 0.66 0.50012
Target:  5'- gCCCCAGacauggcgCCcGGCCCCucaccucgcgcuggGGGCGgCCc -3'
miRNA:   3'- gGGGGUCga------GGuCCGGGG--------------CCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 148439 0.66 0.476218
Target:  5'- cCCCCCAGggUCAGGUaccgCgGGGCGaaCCg -3'
miRNA:   3'- -GGGGGUCgaGGUCCGg---GgCCCGCa-GG- -5'
5835 3' -65.8 NC_001806.1 + 23736 0.66 0.485006
Target:  5'- gCCCCCGccGC-CCAGGCCgCGugcGGCGg-- -3'
miRNA:   3'- -GGGGGU--CGaGGUCCGGgGC---CCGCagg -5'
5835 3' -65.8 NC_001806.1 + 109211 0.66 0.485006
Target:  5'- aCCCaccaCAGCUCCcuuagcgugGGGCCgggCgGGGCGgaaUCCu -3'
miRNA:   3'- -GGGg---GUCGAGG---------UCCGG---GgCCCGC---AGG- -5'
5835 3' -65.8 NC_001806.1 + 2296 0.66 0.485006
Target:  5'- aCUCCGGCggcccccCCgAGGCCCCGccgccGGCcagGUCCu -3'
miRNA:   3'- gGGGGUCGa------GG-UCCGGGGC-----CCG---CAGG- -5'
5835 3' -65.8 NC_001806.1 + 46103 0.66 0.502809
Target:  5'- -gUCCGGCcCgGGGCCUgcgCGGGCGccUCCg -3'
miRNA:   3'- ggGGGUCGaGgUCCGGG---GCCCGC--AGG- -5'
5835 3' -65.8 NC_001806.1 + 72155 0.66 0.476218
Target:  5'- gCCCCCugucguacacGCUCCuaaccauuGGCCCCcuagggaugGGGCuGUUCa -3'
miRNA:   3'- -GGGGGu---------CGAGGu-------CCGGGG---------CCCG-CAGG- -5'
5835 3' -65.8 NC_001806.1 + 69399 0.66 0.485006
Target:  5'- gCCCUggaggGGUUUCuGGCggCGGGCGUCCc -3'
miRNA:   3'- gGGGG-----UCGAGGuCCGggGCCCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 20365 0.66 0.502809
Target:  5'- gCCgCCC-GCcgUCCcguuGGUCCC-GGCGUCCg -3'
miRNA:   3'- -GG-GGGuCG--AGGu---CCGGGGcCCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 144119 0.66 0.520891
Target:  5'- cCCCCCuGCcuUCCAcccuccGGCCCCccGCGagUCCa -3'
miRNA:   3'- -GGGGGuCG--AGGU------CCGGGGccCGC--AGG- -5'
5835 3' -65.8 NC_001806.1 + 96528 0.66 0.493871
Target:  5'- aCUCCGGCgCCGcccGCCCCuGGCGcCCc -3'
miRNA:   3'- gGGGGUCGaGGUc--CGGGGcCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 4120 0.66 0.476218
Target:  5'- gCCUCgGGCgccccCCAGaGgCCCGGGCGgCUg -3'
miRNA:   3'- -GGGGgUCGa----GGUC-CgGGGCCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 44283 0.66 0.476218
Target:  5'- gCCCCC-GCaaCCAGGagCUGGGCGaCCu -3'
miRNA:   3'- -GGGGGuCGa-GGUCCggGGCCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 3987 0.66 0.476218
Target:  5'- aCCCCAGgcCUCCGcGUCCgGGGUGUa- -3'
miRNA:   3'- gGGGGUC--GAGGUcCGGGgCCCGCAgg -5'
5835 3' -65.8 NC_001806.1 + 60589 0.66 0.491204
Target:  5'- aUCCCCgggacguuaccgggGGCcacCCcGGCCCCaGGuCGUCCu -3'
miRNA:   3'- -GGGGG--------------UCGa--GGuCCGGGGcCC-GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.