miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5835 3' -65.8 NC_001806.1 + 144119 0.66 0.520891
Target:  5'- cCCCCCuGCcuUCCAcccuccGGCCCCccGCGagUCCa -3'
miRNA:   3'- -GGGGGuCG--AGGU------CCGGGGccCGC--AGG- -5'
5835 3' -65.8 NC_001806.1 + 30123 0.75 0.13461
Target:  5'- cCCCCCGGCcucUCCccacAGGCCCCccgcGGCGcCCa -3'
miRNA:   3'- -GGGGGUCG---AGG----UCCGGGGc---CCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 50936 0.74 0.151687
Target:  5'- cUCCUCAGCgccCCGGGCCCCc-GUGUCCg -3'
miRNA:   3'- -GGGGGUCGa--GGUCCGGGGccCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 17992 0.74 0.158677
Target:  5'- cCCaCCCAGCUaccCCAGGCCCCcuuacgacGucccauccggugcGGCGUCCg -3'
miRNA:   3'- -GG-GGGUCGA---GGUCCGGGG--------C-------------CCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 32972 0.74 0.162856
Target:  5'- cCCCUUGGgUCCgccgGGGCCCCGGGCcgggCCg -3'
miRNA:   3'- -GGGGGUCgAGG----UCCGGGGCCCGca--GG- -5'
5835 3' -65.8 NC_001806.1 + 77435 0.74 0.17476
Target:  5'- gCCCUAGacgCCc-GCgCCCGGGCGUCCg -3'
miRNA:   3'- gGGGGUCga-GGucCG-GGGCCCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 33031 0.73 0.178897
Target:  5'- aCCCCgAGUguucaUCuCAGGCCCCGGGcCGggaacCCg -3'
miRNA:   3'- -GGGGgUCG-----AG-GUCCGGGGCCC-GCa----GG- -5'
5835 3' -65.8 NC_001806.1 + 30221 0.73 0.187432
Target:  5'- gCCCCCGcGCggCCGuGGCCCCGuGCGUgCg -3'
miRNA:   3'- -GGGGGU-CGa-GGU-CCGGGGCcCGCAgG- -5'
5835 3' -65.8 NC_001806.1 + 2107 0.73 0.191833
Target:  5'- gCCCCAGaaaCUCCAcGGCCCC-GGCGaaggCCa -3'
miRNA:   3'- gGGGGUC---GAGGU-CCGGGGcCCGCa---GG- -5'
5835 3' -65.8 NC_001806.1 + 30272 0.75 0.131414
Target:  5'- gCCCCCGcGC-CCcGGCCCCcgGGGCGgagCCg -3'
miRNA:   3'- -GGGGGU-CGaGGuCCGGGG--CCCGCa--GG- -5'
5835 3' -65.8 NC_001806.1 + 60307 0.75 0.128288
Target:  5'- aCCCCCAGUUCCuGGCCCUcuuUGUCCg -3'
miRNA:   3'- -GGGGGUCGAGGuCCGGGGcccGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 21135 0.77 0.105658
Target:  5'- gCCCCGGCUCCccGGGCCCCaccgacGGGcCG-CCg -3'
miRNA:   3'- gGGGGUCGAGG--UCCGGGG------CCC-GCaGG- -5'
5835 3' -65.8 NC_001806.1 + 30172 0.81 0.055456
Target:  5'- gCCCCCcGCcCCGGGCCCCccGCGUCCg -3'
miRNA:   3'- -GGGGGuCGaGGUCCGGGGccCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 135398 0.79 0.070675
Target:  5'- gCUCCCAgaggcgcgacaggcGCUCCAGGUCCUGGGCGUa- -3'
miRNA:   3'- -GGGGGU--------------CGAGGUCCGGGGCCCGCAgg -5'
5835 3' -65.8 NC_001806.1 + 714 0.79 0.071204
Target:  5'- cUCCCCGGCcCCAGcccuCCCCGGcGCGUCCc -3'
miRNA:   3'- -GGGGGUCGaGGUCc---GGGGCC-CGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 81267 0.79 0.071204
Target:  5'- uCCCCgGGcCUCacgGGGUCCCGGGCGUCg -3'
miRNA:   3'- -GGGGgUC-GAGg--UCCGGGGCCCGCAGg -5'
5835 3' -65.8 NC_001806.1 + 106688 0.79 0.071204
Target:  5'- cCCCCCgggGGCUcuucCCGGGcCCCCGGGCGgCCc -3'
miRNA:   3'- -GGGGG---UCGA----GGUCC-GGGGCCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 87425 0.78 0.084702
Target:  5'- cCCCCCGGCgccCCuaaaucGCCCCuGGGUGUCCg -3'
miRNA:   3'- -GGGGGUCGa--GGuc----CGGGG-CCCGCAGG- -5'
5835 3' -65.8 NC_001806.1 + 22158 0.78 0.088986
Target:  5'- aCgCCGGUUCgAGGCCUCGGGCGcCCc -3'
miRNA:   3'- gGgGGUCGAGgUCCGGGGCCCGCaGG- -5'
5835 3' -65.8 NC_001806.1 + 41356 0.77 0.095801
Target:  5'- cCCCCCGGCaUCCAGGCCgCCaggGGGCaUCa -3'
miRNA:   3'- -GGGGGUCG-AGGUCCGG-GG---CCCGcAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.