miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5841 3' -57.5 NC_001806.1 + 10121 0.66 0.856669
Target:  5'- --aCGGCgCGUcGGCCGGggACAgACAu -3'
miRNA:   3'- cagGCCGaGCAuCCGGCCa-UGUgUGU- -5'
5841 3' -57.5 NC_001806.1 + 63464 0.66 0.856669
Target:  5'- -cCCGG-UCGU-GGCCGcacUGCGCACAa -3'
miRNA:   3'- caGGCCgAGCAuCCGGCc--AUGUGUGU- -5'
5841 3' -57.5 NC_001806.1 + 120904 0.66 0.840925
Target:  5'- -cCCGGC-CGgauucccGGGCCGGagcucgcgGCACGCGc -3'
miRNA:   3'- caGGCCGaGCa------UCCGGCCa-------UGUGUGU- -5'
5841 3' -57.5 NC_001806.1 + 55787 0.66 0.840925
Target:  5'- --gCGGUgaUCGUGGGCCcGGUGgAgGCAg -3'
miRNA:   3'- cagGCCG--AGCAUCCGG-CCAUgUgUGU- -5'
5841 3' -57.5 NC_001806.1 + 85549 0.66 0.840925
Target:  5'- cGUuuGuGCUCGUGGuCCGGcGCAaCGCAg -3'
miRNA:   3'- -CAggC-CGAGCAUCcGGCCaUGU-GUGU- -5'
5841 3' -57.5 NC_001806.1 + 135890 0.66 0.83277
Target:  5'- -cCCGGcCUCGUcgAGGuaGGaACGCACGg -3'
miRNA:   3'- caGGCC-GAGCA--UCCggCCaUGUGUGU- -5'
5841 3' -57.5 NC_001806.1 + 2227 0.66 0.824436
Target:  5'- uGUCCGGCcCGcacaGCCGGUugGC-CAg -3'
miRNA:   3'- -CAGGCCGaGCauc-CGGCCAugUGuGU- -5'
5841 3' -57.5 NC_001806.1 + 44784 0.67 0.80726
Target:  5'- -aUCGGCUCGgugaGGGCCGGggggguCGC-CAg -3'
miRNA:   3'- caGGCCGAGCa---UCCGGCCau----GUGuGU- -5'
5841 3' -57.5 NC_001806.1 + 13617 0.67 0.80726
Target:  5'- gGUCCGGU----AGGCCcgccuggauguGGUACACGCGc -3'
miRNA:   3'- -CAGGCCGagcaUCCGG-----------CCAUGUGUGU- -5'
5841 3' -57.5 NC_001806.1 + 20391 0.67 0.803748
Target:  5'- cGUCCGGCgggCGggaccgggGGGCCcGGggacggccaacggGCGCGCGg -3'
miRNA:   3'- -CAGGCCGa--GCa-------UCCGG-CCa------------UGUGUGU- -5'
5841 3' -57.5 NC_001806.1 + 89264 0.67 0.77943
Target:  5'- -cCCGGCUggcuccgCGaGGGCCGGcGgGCGCAa -3'
miRNA:   3'- caGGCCGA-------GCaUCCGGCCaUgUGUGU- -5'
5841 3' -57.5 NC_001806.1 + 126138 0.68 0.771105
Target:  5'- --aCGGCggCG-AGGCCGGcgccgACACGCGg -3'
miRNA:   3'- cagGCCGa-GCaUCCGGCCa----UGUGUGU- -5'
5841 3' -57.5 NC_001806.1 + 24018 0.68 0.761741
Target:  5'- -aCCGGCUgUGcGGGCCGG-ACACGg- -3'
miRNA:   3'- caGGCCGA-GCaUCCGGCCaUGUGUgu -5'
5841 3' -57.5 NC_001806.1 + 22423 0.68 0.733005
Target:  5'- -gCCGGCcgcuUCGgcugGGGCCuGGcGCACGCGg -3'
miRNA:   3'- caGGCCG----AGCa---UCCGG-CCaUGUGUGU- -5'
5841 3' -57.5 NC_001806.1 + 1780 0.68 0.723243
Target:  5'- -aCCGGCgUGUccGGGCCGaagcgcGUGCGCACGc -3'
miRNA:   3'- caGGCCGaGCA--UCCGGC------CAUGUGUGU- -5'
5841 3' -57.5 NC_001806.1 + 66825 0.69 0.693531
Target:  5'- -gCCGGCcCGgguGGCCGGUGUGCGCc -3'
miRNA:   3'- caGGCCGaGCau-CCGGCCAUGUGUGu -5'
5841 3' -57.5 NC_001806.1 + 33615 0.69 0.693531
Target:  5'- -aCCGGCgcggggCGggGGGCCGGaUACcCACAc -3'
miRNA:   3'- caGGCCGa-----GCa-UCCGGCC-AUGuGUGU- -5'
5841 3' -57.5 NC_001806.1 + 147671 0.69 0.683514
Target:  5'- -gCCGGCUCcgccccggGGGCCGGgGCGCGgGg -3'
miRNA:   3'- caGGCCGAGca------UCCGGCCaUGUGUgU- -5'
5841 3' -57.5 NC_001806.1 + 30410 0.69 0.683514
Target:  5'- --gCGGCUCGgggGGGCCGGgcguggagggUGgGCACGg -3'
miRNA:   3'- cagGCCGAGCa--UCCGGCC----------AUgUGUGU- -5'
5841 3' -57.5 NC_001806.1 + 72136 0.69 0.667404
Target:  5'- -gCCGGCcCGUGGGCCcugcgcccccugucGUACACGCu -3'
miRNA:   3'- caGGCCGaGCAUCCGGc-------------CAUGUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.