miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5841 5' -58 NC_001806.1 + 98711 0.82 0.149345
Target:  5'- gUCUGUugGUCCUggcCGGCCUGGCGGCg -3'
miRNA:   3'- -GGACAugCAGGGa--GCCGGGCUGCUGg -5'
5841 5' -58 NC_001806.1 + 124779 0.76 0.345689
Target:  5'- aCCUGUACG-CCCUgGGCCaGACGcuGCUg -3'
miRNA:   3'- -GGACAUGCaGGGAgCCGGgCUGC--UGG- -5'
5841 5' -58 NC_001806.1 + 100747 0.75 0.383472
Target:  5'- cCCagGUGCG-CCCggacagcgcgagcUCGGCCuCGGCGGCCa -3'
miRNA:   3'- -GGa-CAUGCaGGG-------------AGCCGG-GCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 70824 0.75 0.403777
Target:  5'- gCUGgcgGCGUCUgUCGGCCUGcuaucaagccgcggcGCGGCCg -3'
miRNA:   3'- gGACa--UGCAGGgAGCCGGGC---------------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 151520 0.75 0.407089
Target:  5'- aCUGUGCGguugggacggcgCCCgUgGGCCCGgGCGGCCg -3'
miRNA:   3'- gGACAUGCa-----------GGG-AgCCGGGC-UGCUGG- -5'
5841 5' -58 NC_001806.1 + 102489 0.74 0.451636
Target:  5'- aCUGUGgcCGgccgCCCUCGGuCCCGaucaccGCGGCCa -3'
miRNA:   3'- gGACAU--GCa---GGGAGCC-GGGC------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 143971 0.74 0.460506
Target:  5'- cCCUGccccgGCGaCCCcCGGCCCGcACGAUCc -3'
miRNA:   3'- -GGACa----UGCaGGGaGCCGGGC-UGCUGG- -5'
5841 5' -58 NC_001806.1 + 126491 0.72 0.534466
Target:  5'- cCCggGcGCGUCCC-CGGCCCGGaggaGGCUc -3'
miRNA:   3'- -GGa-CaUGCAGGGaGCCGGGCUg---CUGG- -5'
5841 5' -58 NC_001806.1 + 124357 0.72 0.534466
Target:  5'- cCCUGcGCacaacaaacCCCUCGGUCuCGACGGCCc -3'
miRNA:   3'- -GGACaUGca-------GGGAGCCGG-GCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 86645 0.72 0.544027
Target:  5'- uCUUGUcgcccACGgCCgUCaGCCCGGCGGCCg -3'
miRNA:   3'- -GGACA-----UGCaGGgAGcCGGGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 90499 0.72 0.58277
Target:  5'- ---cUACacCCCcCGGCCCGGCGACCu -3'
miRNA:   3'- ggacAUGcaGGGaGCCGGGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 56638 0.72 0.58277
Target:  5'- gCCgGUGCGaCCUcaUCGG-CCGGCGGCCc -3'
miRNA:   3'- -GGaCAUGCaGGG--AGCCgGGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 131961 0.71 0.592553
Target:  5'- --cGUGCGUCCUggCGGCCCuGGagcgccaGACCg -3'
miRNA:   3'- ggaCAUGCAGGGa-GCCGGG-CUg------CUGG- -5'
5841 5' -58 NC_001806.1 + 57357 0.71 0.592553
Target:  5'- cCCUGgcCGUCCUccggggacaCGGCCCGGUGGCUg -3'
miRNA:   3'- -GGACauGCAGGGa--------GCCGGGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 137804 0.71 0.602362
Target:  5'- cCCUGUACcacaCCCcccaguacgCGGCCCGccuGCGGCCc -3'
miRNA:   3'- -GGACAUGca--GGGa--------GCCGGGC---UGCUGG- -5'
5841 5' -58 NC_001806.1 + 125295 0.71 0.612192
Target:  5'- aCUaaGCGUCCCUgGGCCC--UGGCCg -3'
miRNA:   3'- gGAcaUGCAGGGAgCCGGGcuGCUGG- -5'
5841 5' -58 NC_001806.1 + 115906 0.71 0.612192
Target:  5'- cUCgGUGCGUCUg--GGCCCGACaGACCu -3'
miRNA:   3'- -GGaCAUGCAGGgagCCGGGCUG-CUGG- -5'
5841 5' -58 NC_001806.1 + 51683 0.71 0.612192
Target:  5'- gCCUGgACGUCCCcgaGGacCCCGugGGCg -3'
miRNA:   3'- -GGACaUGCAGGGag-CC--GGGCugCUGg -5'
5841 5' -58 NC_001806.1 + 121647 0.71 0.622036
Target:  5'- uCCUGUcccuGCGUCgCCcCGuGUCUGugGGCCa -3'
miRNA:   3'- -GGACA----UGCAG-GGaGC-CGGGCugCUGG- -5'
5841 5' -58 NC_001806.1 + 72126 0.71 0.641737
Target:  5'- ----cACGUUCUUcgcCGGCCCGugGGCCc -3'
miRNA:   3'- ggacaUGCAGGGA---GCCGGGCugCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.