miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5841 5' -58 NC_001806.1 + 1430 0.66 0.886137
Target:  5'- ----aGCGaaUCCCgggCGGCgCCGGCGGCa -3'
miRNA:   3'- ggacaUGC--AGGGa--GCCG-GGCUGCUGg -5'
5841 5' -58 NC_001806.1 + 3139 0.7 0.661411
Target:  5'- ----cGCGgggCCCagGGcCCCGGCGACCa -3'
miRNA:   3'- ggacaUGCa--GGGagCC-GGGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 4462 0.66 0.879408
Target:  5'- gCUGccgGCGccgCgCUCGacggaccccGCCCGACGGCCc -3'
miRNA:   3'- gGACa--UGCa--GgGAGC---------CGGGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 7875 0.67 0.810295
Target:  5'- cCCUGUGg--CCCU-GGCggaCGGCGGCCa -3'
miRNA:   3'- -GGACAUgcaGGGAgCCGg--GCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 13008 0.66 0.865343
Target:  5'- uCgUGUAUGgggCCUUgGGCCCGugccacccgGCGAUCu -3'
miRNA:   3'- -GgACAUGCa--GGGAgCCGGGC---------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 18013 0.68 0.793115
Target:  5'- cCCUuacgACGUCCCaucCGGUgCGGCGuCCg -3'
miRNA:   3'- -GGAca--UGCAGGGa--GCCGgGCUGCuGG- -5'
5841 5' -58 NC_001806.1 + 19048 0.66 0.858016
Target:  5'- gCUGcucCGcCUCUgGGCCUGGCGcACCg -3'
miRNA:   3'- gGACau-GCaGGGAgCCGGGCUGC-UGG- -5'
5841 5' -58 NC_001806.1 + 20369 0.69 0.729169
Target:  5'- cCCgc--CGUCCCgUUGGuCCCGGCGuCCg -3'
miRNA:   3'- -GGacauGCAGGG-AGCC-GGGCUGCuGG- -5'
5841 5' -58 NC_001806.1 + 21576 0.67 0.818664
Target:  5'- gCCUGUcgccGCG-CCCgcCGGCCCaGCcGCCg -3'
miRNA:   3'- -GGACA----UGCaGGGa-GCCGGGcUGcUGG- -5'
5841 5' -58 NC_001806.1 + 22037 0.68 0.766357
Target:  5'- --gGUACGUCagcggggagCCgUGGCCCGGCG-CCg -3'
miRNA:   3'- ggaCAUGCAG---------GGaGCCGGGCUGCuGG- -5'
5841 5' -58 NC_001806.1 + 22160 0.67 0.818664
Target:  5'- gCCgGUuCGaggCCUCGGgcgcCCCGGCGGCCg -3'
miRNA:   3'- -GGaCAuGCag-GGAGCC----GGGCUGCUGG- -5'
5841 5' -58 NC_001806.1 + 22868 0.67 0.834924
Target:  5'- aCCUGgcggcCGUCCCggggcuggccggGGCCCGgcccgccagccccccGCGGCCg -3'
miRNA:   3'- -GGACau---GCAGGGag----------CCGGGC---------------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 23098 0.68 0.801776
Target:  5'- gCCUGgucgcCGgggCCCUgGGCCCcGCGcuGCCg -3'
miRNA:   3'- -GGACau---GCa--GGGAgCCGGGcUGC--UGG- -5'
5841 5' -58 NC_001806.1 + 23301 0.67 0.834924
Target:  5'- ------aGUCCCggccCGGCCCGGCcGCCc -3'
miRNA:   3'- ggacaugCAGGGa---GCCGGGCUGcUGG- -5'
5841 5' -58 NC_001806.1 + 23824 0.67 0.826876
Target:  5'- cCCUGcGCG--CCUCgGGCCCGcugcgccgcaugGCGGCCu -3'
miRNA:   3'- -GGACaUGCagGGAG-CCGGGC------------UGCUGG- -5'
5841 5' -58 NC_001806.1 + 26781 0.66 0.879408
Target:  5'- gCCUGcGCGUCaCCgCGGagcaCCUGGCGcGCCu -3'
miRNA:   3'- -GGACaUGCAG-GGaGCC----GGGCUGC-UGG- -5'
5841 5' -58 NC_001806.1 + 26966 0.69 0.719657
Target:  5'- gCCUGgcGCG-CCg-CGGCUCGugGGCCc -3'
miRNA:   3'- -GGACa-UGCaGGgaGCCGGGCugCUGG- -5'
5841 5' -58 NC_001806.1 + 27073 0.66 0.886137
Target:  5'- gCCcGUGCccgggCCCUggcccgcggagcCGGCCCGGCGAa- -3'
miRNA:   3'- -GGaCAUGca---GGGA------------GCCGGGCUGCUgg -5'
5841 5' -58 NC_001806.1 + 35126 0.69 0.747951
Target:  5'- cCCgUGgacGCGgCCCUCGGUUgGGCGACg -3'
miRNA:   3'- -GG-ACa--UGCaGGGAGCCGGgCUGCUGg -5'
5841 5' -58 NC_001806.1 + 40252 0.67 0.810295
Target:  5'- gCUGUAggaggacccaguCGUCCUUacugaCGGCCCGccggacggauACGGCCu -3'
miRNA:   3'- gGACAU------------GCAGGGA-----GCCGGGC----------UGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.