miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 3' -61.2 NC_001806.1 + 5033 0.79 0.139093
Target:  5'- gGCCc--CCGCGGgGGUCGGGGCCGAGg -3'
miRNA:   3'- -CGGaccGGCGCCaCUAGCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 10582 0.78 0.165099
Target:  5'- cGCCUGGCCGgGGUGGUgauaUGGGuccugGCCGAu -3'
miRNA:   3'- -CGGACCGGCgCCACUA----GCCC-----UGGCUc -5'
5855 3' -61.2 NC_001806.1 + 81784 0.77 0.177529
Target:  5'- cGCCUGuaUGCGGUGGUCGGGGacacgcCCGAc -3'
miRNA:   3'- -CGGACcgGCGCCACUAGCCCU------GGCUc -5'
5855 3' -61.2 NC_001806.1 + 19571 0.75 0.235848
Target:  5'- gGCCUGGcCCGCGGUG---GGGGCCaGGGu -3'
miRNA:   3'- -CGGACC-GGCGCCACuagCCCUGG-CUC- -5'
5855 3' -61.2 NC_001806.1 + 1006 0.75 0.235848
Target:  5'- cGCCccccgGGCCcacgccggGCGGUGGgggcCGGGGCCGGGg -3'
miRNA:   3'- -CGGa----CCGG--------CGCCACUa---GCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 82284 0.75 0.235848
Target:  5'- uUCUGGCCcUGGUGGUCGGGgacgcGCUGAGg -3'
miRNA:   3'- cGGACCGGcGCCACUAGCCC-----UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 93115 0.75 0.247004
Target:  5'- aGCCgGGCCGgGGUc-UCGGGugCGGGa -3'
miRNA:   3'- -CGGaCCGGCgCCAcuAGCCCugGCUC- -5'
5855 3' -61.2 NC_001806.1 + 101770 0.75 0.258594
Target:  5'- cCCUGGgaagccCCGCGGUcGUgGGGGCCGAGc -3'
miRNA:   3'- cGGACC------GGCGCCAcUAgCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 131663 0.74 0.270625
Target:  5'- cGCCcaUGGCagauggCGCGGaUGggCGGGGCCGGGg -3'
miRNA:   3'- -CGG--ACCG------GCGCC-ACuaGCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 147428 0.74 0.296029
Target:  5'- gGCgaGGCCGCGG-GGUCGGGcGUCGGGa -3'
miRNA:   3'- -CGgaCCGGCGCCaCUAGCCC-UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 110244 0.73 0.323249
Target:  5'- -gCUGGCCGCGG-GGUUGGGGUCGuGg -3'
miRNA:   3'- cgGACCGGCGCCaCUAGCCCUGGCuC- -5'
5855 3' -61.2 NC_001806.1 + 64185 0.71 0.399218
Target:  5'- cCCUGGCCGCcagcucguucaGGUGGgauUCGGGgaggucgcaggaACCGAGc -3'
miRNA:   3'- cGGACCGGCG-----------CCACU---AGCCC------------UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 124107 0.71 0.407419
Target:  5'- gGCCUgagGGCCGCccccagcgcgaGGUGA--GGGGCCGGGc -3'
miRNA:   3'- -CGGA---CCGGCG-----------CCACUagCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 90748 0.71 0.408245
Target:  5'- cGCCUGGCggaacagcccguacaCGCGGUcGggCGGGggcuuggcgugcccGCCGAGg -3'
miRNA:   3'- -CGGACCG---------------GCGCCA-CuaGCCC--------------UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 126725 0.71 0.44125
Target:  5'- gGCUggGGCCGgGGagGGcUGGGGCCGGGg -3'
miRNA:   3'- -CGGa-CCGGCgCCa-CUaGCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 126661 0.71 0.44125
Target:  5'- gGCUggGGCCGgGGagGGcUGGGGCCGGGg -3'
miRNA:   3'- -CGGa-CCGGCgCCa-CUaGCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 126693 0.71 0.44125
Target:  5'- gGCUggGGCCGgGGagGGcUGGGGCCGGGg -3'
miRNA:   3'- -CGGa-CCGGCgCCa-CUaGCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 119321 0.7 0.467641
Target:  5'- cGCCgGGCCGuuGUGGggcccCGGG-CCGGGg -3'
miRNA:   3'- -CGGaCCGGCgcCACUa----GCCCuGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 122281 0.7 0.476617
Target:  5'- cGUCUGGCCccucCGGgggGGUUGGGGuuGGGg -3'
miRNA:   3'- -CGGACCGGc---GCCa--CUAGCCCUggCUC- -5'
5855 3' -61.2 NC_001806.1 + 149485 0.7 0.485678
Target:  5'- gGCCUGcGCCGCGGcGGccCGGGGCgccgCGGGc -3'
miRNA:   3'- -CGGAC-CGGCGCCaCUa-GCCCUG----GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.