miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 3' -61.2 NC_001806.1 + 1006 0.75 0.235848
Target:  5'- cGCCccccgGGCCcacgccggGCGGUGGgggcCGGGGCCGGGg -3'
miRNA:   3'- -CGGa----CCGG--------CGCCACUa---GCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 1800 0.66 0.715247
Target:  5'- uGCCcauuaagGGCCGCGGgaauugccgGAagCGGGaagggcgGCCGGGg -3'
miRNA:   3'- -CGGa------CCGGCGCCa--------CUa-GCCC-------UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 4456 0.66 0.735085
Target:  5'- aGCCUGgcaugggcGCCGCGGgGGgccugUGGGgagagGCCGGGg -3'
miRNA:   3'- -CGGAC--------CGGCGCCaCUa----GCCC-----UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 5033 0.79 0.139093
Target:  5'- gGCCc--CCGCGGgGGUCGGGGCCGAGg -3'
miRNA:   3'- -CGGaccGGCGCCaCUAGCCCUGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 6591 0.68 0.560753
Target:  5'- cUCUGGCaCGCGGgggugggaagGGUCGGGGgaGGGg -3'
miRNA:   3'- cGGACCG-GCGCCa---------CUAGCCCUggCUC- -5'
5855 3' -61.2 NC_001806.1 + 9134 0.68 0.560753
Target:  5'- uGCCgggaggGGCCGCGGaUGggCGGG-CCu-- -3'
miRNA:   3'- -CGGa-----CCGGCGCC-ACuaGCCCuGGcuc -5'
5855 3' -61.2 NC_001806.1 + 10582 0.78 0.165099
Target:  5'- cGCCUGGCCGgGGUGGUgauaUGGGuccugGCCGAu -3'
miRNA:   3'- -CGGACCGGCgCCACUA----GCCC-----UGGCUc -5'
5855 3' -61.2 NC_001806.1 + 14682 0.66 0.735085
Target:  5'- cCCUGGCCGCcuc---CGGGGgCGAGg -3'
miRNA:   3'- cGGACCGGCGccacuaGCCCUgGCUC- -5'
5855 3' -61.2 NC_001806.1 + 15479 0.69 0.521758
Target:  5'- cGCCUGcaGCUGCcgGGUGGUCGccucgcuGGACCGGa -3'
miRNA:   3'- -CGGAC--CGGCG--CCACUAGC-------CCUGGCUc -5'
5855 3' -61.2 NC_001806.1 + 19571 0.75 0.235848
Target:  5'- gGCCUGGcCCGCGGUG---GGGGCCaGGGu -3'
miRNA:   3'- -CGGACC-GGCGCCACuagCCCUGG-CUC- -5'
5855 3' -61.2 NC_001806.1 + 19637 0.68 0.593681
Target:  5'- gGCCacGGCCGagucggcacgggaccUGGUGcgCGGGGCCGcGg -3'
miRNA:   3'- -CGGa-CCGGC---------------GCCACuaGCCCUGGCuC- -5'
5855 3' -61.2 NC_001806.1 + 20880 0.67 0.615161
Target:  5'- gGCCUGGCCcaugaugcaggggGCGGUGaacuuuagcacccuAuaagucUCGGGACCGc- -3'
miRNA:   3'- -CGGACCGG-------------CGCCAC--------------U------AGCCCUGGCuc -5'
5855 3' -61.2 NC_001806.1 + 23973 0.66 0.714295
Target:  5'- aGCCgGGCCGaCGacgcgaugaugGGUCGGGGCCa-- -3'
miRNA:   3'- -CGGaCCGGC-GCca---------CUAGCCCUGGcuc -5'
5855 3' -61.2 NC_001806.1 + 25394 0.67 0.648442
Target:  5'- cGCCUGgaggacggcGCCGgGGcucUCGGGGCCGcAGg -3'
miRNA:   3'- -CGGAC---------CGGCgCCacuAGCCCUGGC-UC- -5'
5855 3' -61.2 NC_001806.1 + 26490 0.67 0.667973
Target:  5'- cCCUGGCCGUGGUccUCGaGGAggCGGGu -3'
miRNA:   3'- cGGACCGGCGCCAcuAGC-CCUg-GCUC- -5'
5855 3' -61.2 NC_001806.1 + 33236 0.66 0.735085
Target:  5'- cGCCgUGGCgGCGcugcgccuugcGUGGggcUCGGGGgCGAGc -3'
miRNA:   3'- -CGG-ACCGgCGC-----------CACU---AGCCCUgGCUC- -5'
5855 3' -61.2 NC_001806.1 + 34226 0.66 0.734148
Target:  5'- gGCCaugaGGCCGCuguugguGGUGGUCGaGGGgCGGu -3'
miRNA:   3'- -CGGa---CCGGCG-------CCACUAGC-CCUgGCUc -5'
5855 3' -61.2 NC_001806.1 + 39108 0.69 0.551158
Target:  5'- cGCCUGGCCcaCGGg---CGGGuCCGAu -3'
miRNA:   3'- -CGGACCGGc-GCCacuaGCCCuGGCUc -5'
5855 3' -61.2 NC_001806.1 + 40016 0.68 0.59953
Target:  5'- cGCCUGGCCaccagGGUGGccCGGGcgacccuggucGCCGAGc -3'
miRNA:   3'- -CGGACCGGcg---CCACUa-GCCC-----------UGGCUC- -5'
5855 3' -61.2 NC_001806.1 + 56835 0.66 0.706653
Target:  5'- cGCCgcgGGCC-CGGgGGgcaGGGGcCCGAGa -3'
miRNA:   3'- -CGGa--CCGGcGCCaCUag-CCCU-GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.