Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5855 | 5' | -55.5 | NC_001806.1 | + | 8070 | 0.77 | 0.389948 |
Target: 5'- cGCCGCAGccGCCGCaGCCGCcGcCGACAc -3' miRNA: 3'- -CGGUGUCa-UGGCGaUGGCG-CuGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 148638 | 0.77 | 0.389948 |
Target: 5'- cGCC-CGGUGCgGCgGCgGCGACGGCGg -3' miRNA: 3'- -CGGuGUCAUGgCGaUGgCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 128512 | 0.76 | 0.406899 |
Target: 5'- gGCCGC-GUGCgGCgGCgGCGACGACGa -3' miRNA: 3'- -CGGUGuCAUGgCGaUGgCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 127848 | 0.76 | 0.451228 |
Target: 5'- cGCCGCuGcGCCugUGCCGCGGCGGCAa -3' miRNA: 3'- -CGGUGuCaUGGcgAUGGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 700 | 0.76 | 0.451228 |
Target: 5'- gGCgGCGGggGCCGCgaugGCgGCGGCGGCGg -3' miRNA: 3'- -CGgUGUCa-UGGCGa---UGgCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 127493 | 0.74 | 0.507709 |
Target: 5'- cCCGCuGGUGCUGC-GCgGCGACGACGa -3' miRNA: 3'- cGGUG-UCAUGGCGaUGgCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 74646 | 0.74 | 0.517421 |
Target: 5'- cGCCacuGCAGUACgCGCUcugcuucccgGCCGUGAcCGACAa -3' miRNA: 3'- -CGG---UGUCAUG-GCGA----------UGGCGCU-GCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 20393 | 0.74 | 0.527206 |
Target: 5'- gGCCGuCGuGgcgGCCGCccgcGCCGCGACGACGc -3' miRNA: 3'- -CGGU-GU-Ca--UGGCGa---UGGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 147639 | 0.74 | 0.546975 |
Target: 5'- cGCCGaug-GCCGCcaccgGCCGUGACGACGu -3' miRNA: 3'- -CGGUgucaUGGCGa----UGGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 79674 | 0.74 | 0.553951 |
Target: 5'- cGCC-CAGUcGCCGCcACCgacccgggcccgucGCGACGACAg -3' miRNA: 3'- -CGGuGUCA-UGGCGaUGG--------------CGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 149503 | 0.73 | 0.577045 |
Target: 5'- gGCCACGGggcgcgggcggGCCuGC-GCCGCGGCGGCc -3' miRNA: 3'- -CGGUGUCa----------UGG-CGaUGGCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 91797 | 0.73 | 0.601361 |
Target: 5'- uCCACGGaaaccaggcccccucUGCCGCcgGCCGCcGGCGGCAc -3' miRNA: 3'- cGGUGUC---------------AUGGCGa-UGGCG-CUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 140108 | 0.73 | 0.603394 |
Target: 5'- uGCCACGGcggggcgacguggGCaCGCggucACCGUGACGACAu -3' miRNA: 3'- -CGGUGUCa------------UG-GCGa---UGGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 127418 | 0.72 | 0.617649 |
Target: 5'- gGCCACGG-GCCGCagcggcaccgUGCUGgCGGCGGCGg -3' miRNA: 3'- -CGGUGUCaUGGCG----------AUGGC-GCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 40361 | 0.72 | 0.626826 |
Target: 5'- cGCgUACAGUucgagguccaccaGCCGCUGauugcCCGCGACGGCc -3' miRNA: 3'- -CG-GUGUCA-------------UGGCGAU-----GGCGCUGCUGu -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 4264 | 0.72 | 0.627846 |
Target: 5'- cCCGCGGcGCCGCgGCuCGCGACuGGCGg -3' miRNA: 3'- cGGUGUCaUGGCGaUG-GCGCUG-CUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 61277 | 0.72 | 0.638046 |
Target: 5'- aGCCAgGGUAagaccCCGCggggcgGgCGCGACGGCGg -3' miRNA: 3'- -CGGUgUCAU-----GGCGa-----UgGCGCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 93877 | 0.72 | 0.638046 |
Target: 5'- aCCugGGUGCUGgUGCUG-GACGACAc -3' miRNA: 3'- cGGugUCAUGGCgAUGGCgCUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 150455 | 0.72 | 0.638046 |
Target: 5'- cGCaCGCGGUAgCGCacguUGCCGCcGCGGCAc -3' miRNA: 3'- -CG-GUGUCAUgGCG----AUGGCGcUGCUGU- -5' |
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5855 | 5' | -55.5 | NC_001806.1 | + | 17595 | 0.72 | 0.638046 |
Target: 5'- gGCCGuCAGgACCGCcACCGCGaagccGCGAUAa -3' miRNA: 3'- -CGGU-GUCaUGGCGaUGGCGC-----UGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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