miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 548 0.69 0.793875
Target:  5'- cGCCGCc--ACCGCUuuaaaggGCCGCGcGCGACc -3'
miRNA:   3'- -CGGUGucaUGGCGA-------UGGCGC-UGCUGu -5'
5855 5' -55.5 NC_001806.1 + 700 0.76 0.451228
Target:  5'- gGCgGCGGggGCCGCgaugGCgGCGGCGGCGg -3'
miRNA:   3'- -CGgUGUCa-UGGCGa---UGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 991 0.68 0.868996
Target:  5'- cGCCggGCGGUggggGCCGggGCCgggggGCGGCGGCGg -3'
miRNA:   3'- -CGG--UGUCA----UGGCgaUGG-----CGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 4231 0.67 0.903167
Target:  5'- cGCCGCc--GCCGCUGCUGUugGugGugGu -3'
miRNA:   3'- -CGGUGucaUGGCGAUGGCG--CugCugU- -5'
5855 5' -55.5 NC_001806.1 + 4264 0.72 0.627846
Target:  5'- cCCGCGGcGCCGCgGCuCGCGACuGGCGg -3'
miRNA:   3'- cGGUGUCaUGGCGaUG-GCGCUG-CUGU- -5'
5855 5' -55.5 NC_001806.1 + 8070 0.77 0.389948
Target:  5'- cGCCGCAGccGCCGCaGCCGCcGcCGACAc -3'
miRNA:   3'- -CGGUGUCa-UGGCGaUGGCG-CuGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 10044 0.7 0.748081
Target:  5'- gGCUGCAGgcCCGCUucAUCGUccGGCGGCAg -3'
miRNA:   3'- -CGGUGUCauGGCGA--UGGCG--CUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 15567 0.71 0.698859
Target:  5'- gGCUGCAG-ACCGCggGCCGCcACGugGc -3'
miRNA:   3'- -CGGUGUCaUGGCGa-UGGCGcUGCugU- -5'
5855 5' -55.5 NC_001806.1 + 17595 0.72 0.638046
Target:  5'- gGCCGuCAGgACCGCcACCGCGaagccGCGAUAa -3'
miRNA:   3'- -CGGU-GUCaUGGCGaUGGCGC-----UGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 18853 0.7 0.728631
Target:  5'- uCCGCGGgcCCGCguacACCaCGGCGGCAg -3'
miRNA:   3'- cGGUGUCauGGCGa---UGGcGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 19874 0.68 0.845923
Target:  5'- aGUCACggcacgGGUGCUGCUGCCccGCGAuuaCGACu -3'
miRNA:   3'- -CGGUG------UCAUGGCGAUGG--CGCU---GCUGu -5'
5855 5' -55.5 NC_001806.1 + 20393 0.74 0.527206
Target:  5'- gGCCGuCGuGgcgGCCGCccgcGCCGCGACGACGc -3'
miRNA:   3'- -CGGU-GU-Ca--UGGCGa---UGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 24236 0.66 0.931571
Target:  5'- uGCuCGCAGgccagGCCGacgaUGcCCGUGGCGGCc -3'
miRNA:   3'- -CG-GUGUCa----UGGCg---AU-GGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 26161 0.71 0.698859
Target:  5'- aGCCuGCuGUuUCGCUACUGCGugGGCc -3'
miRNA:   3'- -CGG-UGuCAuGGCGAUGGCGCugCUGu -5'
5855 5' -55.5 NC_001806.1 + 26419 0.68 0.845923
Target:  5'- cGCCGCGGgcccccggccGCCGCggacGCCGUGGCGcCc -3'
miRNA:   3'- -CGGUGUCa---------UGGCGa---UGGCGCUGCuGu -5'
5855 5' -55.5 NC_001806.1 + 31061 0.72 0.668585
Target:  5'- aCCGCgAGcGCCGCUACUGCG-CGAUc -3'
miRNA:   3'- cGGUG-UCaUGGCGAUGGCGCuGCUGu -5'
5855 5' -55.5 NC_001806.1 + 31921 0.67 0.876272
Target:  5'- gGCgGCGGgucgucCCGCU-CgGCGACGACc -3'
miRNA:   3'- -CGgUGUCau----GGCGAuGgCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 33071 0.66 0.920919
Target:  5'- cGCCGCcGccCCGCcgGCCGCGAaggaGGCu -3'
miRNA:   3'- -CGGUGuCauGGCGa-UGGCGCUg---CUGu -5'
5855 5' -55.5 NC_001806.1 + 34317 0.72 0.648241
Target:  5'- cGUCGCGGUACCGCc----CGACGACAg -3'
miRNA:   3'- -CGGUGUCAUGGCGauggcGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 36743 0.72 0.648241
Target:  5'- uCCACGGccACCGCcGCCaGCGACGuACAg -3'
miRNA:   3'- cGGUGUCa-UGGCGaUGG-CGCUGC-UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.