miRNA display CGI


Results 1 - 20 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 8070 0.77 0.389948
Target:  5'- cGCCGCAGccGCCGCaGCCGCcGcCGACAc -3'
miRNA:   3'- -CGGUGUCa-UGGCGaUGGCG-CuGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 148638 0.77 0.389948
Target:  5'- cGCC-CGGUGCgGCgGCgGCGACGGCGg -3'
miRNA:   3'- -CGGuGUCAUGgCGaUGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 128512 0.76 0.406899
Target:  5'- gGCCGC-GUGCgGCgGCgGCGACGACGa -3'
miRNA:   3'- -CGGUGuCAUGgCGaUGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 127848 0.76 0.451228
Target:  5'- cGCCGCuGcGCCugUGCCGCGGCGGCAa -3'
miRNA:   3'- -CGGUGuCaUGGcgAUGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 700 0.76 0.451228
Target:  5'- gGCgGCGGggGCCGCgaugGCgGCGGCGGCGg -3'
miRNA:   3'- -CGgUGUCa-UGGCGa---UGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 127493 0.74 0.507709
Target:  5'- cCCGCuGGUGCUGC-GCgGCGACGACGa -3'
miRNA:   3'- cGGUG-UCAUGGCGaUGgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 74646 0.74 0.517421
Target:  5'- cGCCacuGCAGUACgCGCUcugcuucccgGCCGUGAcCGACAa -3'
miRNA:   3'- -CGG---UGUCAUG-GCGA----------UGGCGCU-GCUGU- -5'
5855 5' -55.5 NC_001806.1 + 20393 0.74 0.527206
Target:  5'- gGCCGuCGuGgcgGCCGCccgcGCCGCGACGACGc -3'
miRNA:   3'- -CGGU-GU-Ca--UGGCGa---UGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 147639 0.74 0.546975
Target:  5'- cGCCGaug-GCCGCcaccgGCCGUGACGACGu -3'
miRNA:   3'- -CGGUgucaUGGCGa----UGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 79674 0.74 0.553951
Target:  5'- cGCC-CAGUcGCCGCcACCgacccgggcccgucGCGACGACAg -3'
miRNA:   3'- -CGGuGUCA-UGGCGaUGG--------------CGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 149503 0.73 0.577045
Target:  5'- gGCCACGGggcgcgggcggGCCuGC-GCCGCGGCGGCc -3'
miRNA:   3'- -CGGUGUCa----------UGG-CGaUGGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 91797 0.73 0.601361
Target:  5'- uCCACGGaaaccaggcccccucUGCCGCcgGCCGCcGGCGGCAc -3'
miRNA:   3'- cGGUGUC---------------AUGGCGa-UGGCG-CUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 140108 0.73 0.603394
Target:  5'- uGCCACGGcggggcgacguggGCaCGCggucACCGUGACGACAu -3'
miRNA:   3'- -CGGUGUCa------------UG-GCGa---UGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 127418 0.72 0.617649
Target:  5'- gGCCACGG-GCCGCagcggcaccgUGCUGgCGGCGGCGg -3'
miRNA:   3'- -CGGUGUCaUGGCG----------AUGGC-GCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 40361 0.72 0.626826
Target:  5'- cGCgUACAGUucgagguccaccaGCCGCUGauugcCCGCGACGGCc -3'
miRNA:   3'- -CG-GUGUCA-------------UGGCGAU-----GGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 4264 0.72 0.627846
Target:  5'- cCCGCGGcGCCGCgGCuCGCGACuGGCGg -3'
miRNA:   3'- cGGUGUCaUGGCGaUG-GCGCUG-CUGU- -5'
5855 5' -55.5 NC_001806.1 + 61277 0.72 0.638046
Target:  5'- aGCCAgGGUAagaccCCGCggggcgGgCGCGACGGCGg -3'
miRNA:   3'- -CGGUgUCAU-----GGCGa-----UgGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 93877 0.72 0.638046
Target:  5'- aCCugGGUGCUGgUGCUG-GACGACAc -3'
miRNA:   3'- cGGugUCAUGGCgAUGGCgCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 150455 0.72 0.638046
Target:  5'- cGCaCGCGGUAgCGCacguUGCCGCcGCGGCAc -3'
miRNA:   3'- -CG-GUGUCAUgGCG----AUGGCGcUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 17595 0.72 0.638046
Target:  5'- gGCCGuCAGgACCGCcACCGCGaagccGCGAUAa -3'
miRNA:   3'- -CGGU-GUCaUGGCGaUGGCGC-----UGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.