miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5855 5' -55.5 NC_001806.1 + 38183 0.66 0.915237
Target:  5'- cUCGCGGgGCCGCUGCUGCaccGCGGgGg -3'
miRNA:   3'- cGGUGUCaUGGCGAUGGCGc--UGCUgU- -5'
5855 5' -55.5 NC_001806.1 + 38264 0.66 0.936541
Target:  5'- cGCCGCGGaugaccgGCCGC-ACCG-GGgGGCGg -3'
miRNA:   3'- -CGGUGUCa------UGGCGaUGGCgCUgCUGU- -5'
5855 5' -55.5 NC_001806.1 + 38365 0.69 0.794777
Target:  5'- gGCCACGaccCCGUguaCGCGGCGGCAu -3'
miRNA:   3'- -CGGUGUcauGGCGaugGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 40361 0.72 0.626826
Target:  5'- cGCgUACAGUucgagguccaccaGCCGCUGauugcCCGCGACGGCc -3'
miRNA:   3'- -CG-GUGUCA-------------UGGCGAU-----GGCGCUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 48473 0.72 0.658424
Target:  5'- uGCUGCAGacccccggGCgGCgccGCCGCGGCGGCGa -3'
miRNA:   3'- -CGGUGUCa-------UGgCGa--UGGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 49788 0.68 0.861508
Target:  5'- cGUCGCGGUAgCGgUACUGUGGcCGGCc -3'
miRNA:   3'- -CGGUGUCAUgGCgAUGGCGCU-GCUGu -5'
5855 5' -55.5 NC_001806.1 + 55528 0.67 0.879122
Target:  5'- cGCCACGGUggugcaguucgagcaGCCGC-GCCGCugccCGACc -3'
miRNA:   3'- -CGGUGUCA---------------UGGCGaUGGCGcu--GCUGu -5'
5855 5' -55.5 NC_001806.1 + 55781 0.69 0.821117
Target:  5'- cGCCugGGgucgcgGCCGCgACCcagGCGGCGAa- -3'
miRNA:   3'- -CGGugUCa-----UGGCGaUGG---CGCUGCUgu -5'
5855 5' -55.5 NC_001806.1 + 56791 0.67 0.896783
Target:  5'- cGCCACGcaagcgGCCGCggacgUGCgggaGCGACGGCGg -3'
miRNA:   3'- -CGGUGUca----UGGCG-----AUGg---CGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 57220 0.67 0.90932
Target:  5'- cGCCGCGGUgGCCGUggaacuggcGCUGUucgGGCGGCGg -3'
miRNA:   3'- -CGGUGUCA-UGGCGa--------UGGCG---CUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 58280 0.68 0.853815
Target:  5'- gGCCGCGGUACagaucgGC-GCCGCGAgaUGGCc -3'
miRNA:   3'- -CGGUGUCAUGg-----CGaUGGCGCU--GCUGu -5'
5855 5' -55.5 NC_001806.1 + 61277 0.72 0.638046
Target:  5'- aGCCAgGGUAagaccCCGCggggcgGgCGCGACGGCGg -3'
miRNA:   3'- -CGGUgUCAU-----GGCGa-----UgGCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 64609 0.66 0.926364
Target:  5'- cCCGC-GUugCGCggGCC-CGGCGGCGu -3'
miRNA:   3'- cGGUGuCAugGCGa-UGGcGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 65597 0.7 0.757659
Target:  5'- aGCC-CGGcgGCCGUgagGCCGCGGC-ACAg -3'
miRNA:   3'- -CGGuGUCa-UGGCGa--UGGCGCUGcUGU- -5'
5855 5' -55.5 NC_001806.1 + 66520 0.66 0.926364
Target:  5'- cCUGCGGU-CCGgaGCCGCG-CGGCc -3'
miRNA:   3'- cGGUGUCAuGGCgaUGGCGCuGCUGu -5'
5855 5' -55.5 NC_001806.1 + 68183 0.72 0.668585
Target:  5'- gGCCcCAGcUGCgCGCUGCCGCGGaGGCc -3'
miRNA:   3'- -CGGuGUC-AUG-GCGAUGGCGCUgCUGu -5'
5855 5' -55.5 NC_001806.1 + 70317 0.66 0.920919
Target:  5'- cGCCuccCGGgACCGCcggguuCgGCGGCGACGg -3'
miRNA:   3'- -CGGu--GUCaUGGCGau----GgCGCUGCUGU- -5'
5855 5' -55.5 NC_001806.1 + 70933 0.67 0.896783
Target:  5'- cGCCGCAGgccaaaCGCggGCCGCaaccaGGCGGCc -3'
miRNA:   3'- -CGGUGUCaug---GCGa-UGGCG-----CUGCUGu -5'
5855 5' -55.5 NC_001806.1 + 73638 0.67 0.903167
Target:  5'- cGCCACcc-ACCGCacccCCGCGGCGcGCGu -3'
miRNA:   3'- -CGGUGucaUGGCGau--GGCGCUGC-UGU- -5'
5855 5' -55.5 NC_001806.1 + 74646 0.74 0.517421
Target:  5'- cGCCacuGCAGUACgCGCUcugcuucccgGCCGUGAcCGACAa -3'
miRNA:   3'- -CGG---UGUCAUG-GCGA----------UGGCGCU-GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.