miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 3' -65.5 NC_001806.1 + 80312 0.82 0.046043
Target:  5'- cGCgCGACCGCGgGCCCUGGGcCGCCg -3'
miRNA:   3'- aCG-GCUGGCGCgCGGGGUCCaGCGGg -5'
5859 3' -65.5 NC_001806.1 + 122412 0.8 0.063941
Target:  5'- aGCCGGCCGCggcucggacaGCGCCCCccucGG-CGCCCa -3'
miRNA:   3'- aCGGCUGGCG----------CGCGGGGu---CCaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 66765 0.79 0.078123
Target:  5'- aUGCUcACCGCGUGCCCgGGGuaccgguucgUCGCCCa -3'
miRNA:   3'- -ACGGcUGGCGCGCGGGgUCC----------AGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 46100 0.78 0.080095
Target:  5'- aGCCGACCGCccaGCcuccCCCCucGGUCGCCCc -3'
miRNA:   3'- aCGGCUGGCG---CGc---GGGGu-CCAGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 121963 0.78 0.084182
Target:  5'- aGCCGGCCGCcCGCCCCGcGGacgCGCgCCg -3'
miRNA:   3'- aCGGCUGGCGcGCGGGGU-CCa--GCG-GG- -5'
5859 3' -65.5 NC_001806.1 + 47117 0.78 0.088468
Target:  5'- gGgCGGCCGUGcCGCCCCAGGgugccgaGCCCc -3'
miRNA:   3'- aCgGCUGGCGC-GCGGGGUCCag-----CGGG- -5'
5859 3' -65.5 NC_001806.1 + 128812 0.77 0.097669
Target:  5'- cGCCcagcCCGCgGCGCCCCGGGcCGCCg -3'
miRNA:   3'- aCGGcu--GGCG-CGCGGGGUCCaGCGGg -5'
5859 3' -65.5 NC_001806.1 + 2187 0.76 0.110442
Target:  5'- --aUGGCCGCGCGUCCCAGGggaggcagGCCCa -3'
miRNA:   3'- acgGCUGGCGCGCGGGGUCCag------CGGG- -5'
5859 3' -65.5 NC_001806.1 + 69275 0.76 0.118842
Target:  5'- cGCUGGCgCGUGCGCCCCucc-CGCCCa -3'
miRNA:   3'- aCGGCUG-GCGCGCGGGGuccaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 91653 0.76 0.121771
Target:  5'- gGCC-ACCcCG-GCCCCAGGUCGUCCu -3'
miRNA:   3'- aCGGcUGGcGCgCGGGGUCCAGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 107195 0.75 0.135475
Target:  5'- aGCC-ACCGCGCGCCuguugaCCAGGUucaguugcacgacucCGCCCc -3'
miRNA:   3'- aCGGcUGGCGCGCGG------GGUCCA---------------GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 51532 0.75 0.13745
Target:  5'- cGCCuccacGCCGgGCG-CCCAGGUgCGCCCg -3'
miRNA:   3'- aCGGc----UGGCgCGCgGGGUCCA-GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 146210 0.75 0.13745
Target:  5'- cGCCGugcccgacuCCGCGCcgGCCCCGGGggcggGCCCg -3'
miRNA:   3'- aCGGCu--------GGCGCG--CGGGGUCCag---CGGG- -5'
5859 3' -65.5 NC_001806.1 + 129184 0.75 0.140462
Target:  5'- gGCCG-CCGUGCGCgCCGugagccuGGUCGCCg -3'
miRNA:   3'- aCGGCuGGCGCGCGgGGU-------CCAGCGGg -5'
5859 3' -65.5 NC_001806.1 + 16675 0.75 0.140801
Target:  5'- gGUCGGCCGCGCGCUgCuGG-CGCuCCa -3'
miRNA:   3'- aCGGCUGGCGCGCGGgGuCCaGCG-GG- -5'
5859 3' -65.5 NC_001806.1 + 5409 0.75 0.147727
Target:  5'- aGCCgggGACCGCG-GCCcgcagCCGGGUCGCCa -3'
miRNA:   3'- aCGG---CUGGCGCgCGG-----GGUCCAGCGGg -5'
5859 3' -65.5 NC_001806.1 + 49230 0.75 0.147727
Target:  5'- cGCCG-CCGUcuccaGCGCCuCCAGGgCGCCUg -3'
miRNA:   3'- aCGGCuGGCG-----CGCGG-GGUCCaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 64968 0.74 0.157946
Target:  5'- cUGCCGGcggucucCCGCGCGCCCUccGGcucccgcUCGCCCc -3'
miRNA:   3'- -ACGGCU-------GGCGCGCGGGGu-CC-------AGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 186 0.74 0.1587
Target:  5'- uUGCgCG-CgCGCGCGCCCgCGGGggGCCCg -3'
miRNA:   3'- -ACG-GCuG-GCGCGCGGG-GUCCagCGGG- -5'
5859 3' -65.5 NC_001806.1 + 59238 0.74 0.1587
Target:  5'- gGCCcgucauGGCgGCGCGCCCCAuGGUCGUg- -3'
miRNA:   3'- aCGG------CUGgCGCGCGGGGU-CCAGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.