miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 3' -65.5 NC_001806.1 + 186 0.74 0.1587
Target:  5'- uUGCgCG-CgCGCGCGCCCgCGGGggGCCCg -3'
miRNA:   3'- -ACG-GCuG-GCGCGCGGG-GUCCagCGGG- -5'
5859 3' -65.5 NC_001806.1 + 232 0.72 0.230398
Target:  5'- cGCCcGCCGCGCGCgcgcacgccgCCCGGaccGcCGCCCg -3'
miRNA:   3'- aCGGcUGGCGCGCG----------GGGUC---CaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 548 0.67 0.427527
Target:  5'- cGCCGccaccgcuuuaaaggGCCGCGCGCgaccCCCGGGgggUguguuuugggggggGCCCg -3'
miRNA:   3'- aCGGC---------------UGGCGCGCG----GGGUCCa--G--------------CGGG- -5'
5859 3' -65.5 NC_001806.1 + 1122 0.67 0.435032
Target:  5'- -cCCGcCCGCGCGUCgCAGGcgcaggCGCgCCa -3'
miRNA:   3'- acGGCuGGCGCGCGGgGUCCa-----GCG-GG- -5'
5859 3' -65.5 NC_001806.1 + 1270 0.68 0.386494
Target:  5'- aGCCG-CgGCGCGCCaggCGGG-CGgCCg -3'
miRNA:   3'- aCGGCuGgCGCGCGGg--GUCCaGCgGG- -5'
5859 3' -65.5 NC_001806.1 + 1368 0.69 0.3636
Target:  5'- gGCacgGGCCuCGgGCCCCAGGcacgGCCCg -3'
miRNA:   3'- aCGg--CUGGcGCgCGGGGUCCag--CGGG- -5'
5859 3' -65.5 NC_001806.1 + 1570 0.67 0.435032
Target:  5'- cGCCGAUgGCcaguccCGCCCCcgAGGcggccCGCCCu -3'
miRNA:   3'- aCGGCUGgCGc-----GCGGGG--UCCa----GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 1778 0.67 0.41764
Target:  5'- uUGCCGGaaGCgggaaggGCGgCCgGGGcCGCCCa -3'
miRNA:   3'- -ACGGCUggCG-------CGCgGGgUCCaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 2011 0.67 0.44346
Target:  5'- gGCuUGGCCuGCGUcgguGCCCCGGGgcuuccCGCCUu -3'
miRNA:   3'- aCG-GCUGG-CGCG----CGGGGUCCa-----GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 2187 0.76 0.110442
Target:  5'- --aUGGCCGCGCGUCCCAGGggaggcagGCCCa -3'
miRNA:   3'- acgGCUGGCGCGCGGGGUCCag------CGGG- -5'
5859 3' -65.5 NC_001806.1 + 3839 0.66 0.478058
Target:  5'- gGCCcucACCGUGUGCCCCcccaGGGUCagguaCCg -3'
miRNA:   3'- aCGGc--UGGCGCGCGGGG----UCCAGcg---GG- -5'
5859 3' -65.5 NC_001806.1 + 4456 0.66 0.513934
Target:  5'- aGCCuGGCaUGgGCGCCgCGGGggGCCUg -3'
miRNA:   3'- aCGG-CUG-GCgCGCGGgGUCCagCGGG- -5'
5859 3' -65.5 NC_001806.1 + 4592 0.67 0.44346
Target:  5'- gGCCGGCU-C-CGCCCCGGGg-GCCg -3'
miRNA:   3'- aCGGCUGGcGcGCGGGGUCCagCGGg -5'
5859 3' -65.5 NC_001806.1 + 4705 0.7 0.294269
Target:  5'- -cCCGAgCCGCGCGCCaCCGucgcacgCGCCCg -3'
miRNA:   3'- acGGCU-GGCGCGCGG-GGUcca----GCGGG- -5'
5859 3' -65.5 NC_001806.1 + 5409 0.75 0.147727
Target:  5'- aGCCgggGACCGCG-GCCcgcagCCGGGUCGCCa -3'
miRNA:   3'- aCGG---CUGGCGCgCGG-----GGUCCAGCGGg -5'
5859 3' -65.5 NC_001806.1 + 5584 0.68 0.402275
Target:  5'- gUGCCGAgaCCGCagGCuGCggaagUCCAGG-CGCCCa -3'
miRNA:   3'- -ACGGCU--GGCG--CG-CG-----GGGUCCaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 6286 0.72 0.235152
Target:  5'- gGCCGACCcccuuuuGgGCGCCCCGuccCGCCCc -3'
miRNA:   3'- aCGGCUGG-------CgCGCGGGGUccaGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 7099 0.69 0.348869
Target:  5'- cGUCGA--GgGCGCCCCGGuGUCGUUCa -3'
miRNA:   3'- aCGGCUggCgCGCGGGGUC-CAGCGGG- -5'
5859 3' -65.5 NC_001806.1 + 7397 0.65 0.529514
Target:  5'- cGCCGGCaCGCGacgcgaaaaagGCCCCccggaggcuuuuccGGGUUcccgGCCCg -3'
miRNA:   3'- aCGGCUG-GCGCg----------CGGGG--------------UCCAG----CGGG- -5'
5859 3' -65.5 NC_001806.1 + 7434 0.7 0.294269
Target:  5'- -cCCGACCGCgGCGgUCCGGGcccCGUCCg -3'
miRNA:   3'- acGGCUGGCG-CGCgGGGUCCa--GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.