miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 5' -57.9 NC_001806.1 + 150645 0.79 0.166139
Target:  5'- --cGGCGCGCCCAGGCCCcagcgcgcGCAGGCGg -3'
miRNA:   3'- uucUUGCGCGGGUCCGGG--------CGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 37146 0.74 0.314687
Target:  5'- -cGggUGCGCCCAGGUgCCGCGGcgcGCAg -3'
miRNA:   3'- uuCuuGCGCGGGUCCG-GGCGUU---UGUa -5'
5859 5' -57.9 NC_001806.1 + 85741 0.74 0.337143
Target:  5'- uGGGGAUugGCGgCCAGGCCCGCGAGgGg -3'
miRNA:   3'- -UUCUUG--CGCgGGUCCGGGCGUUUgUa -5'
5859 5' -57.9 NC_001806.1 + 125293 0.73 0.368863
Target:  5'- --uGGCGCGCCgcggcucgUGGGCCCGCGAGCGg -3'
miRNA:   3'- uucUUGCGCGG--------GUCCGGGCGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 128435 0.73 0.368863
Target:  5'- ---uGCGCGCCuCGGGCCCGCugcgccGCAUg -3'
miRNA:   3'- uucuUGCGCGG-GUCCGGGCGuu----UGUA- -5'
5859 5' -57.9 NC_001806.1 + 98258 0.73 0.39396
Target:  5'- gGGGAAaGUGCCCacgAGGCCCGCGAggGCAc -3'
miRNA:   3'- -UUCUUgCGCGGG---UCCGGGCGUU--UGUa -5'
5859 5' -57.9 NC_001806.1 + 149447 0.73 0.402568
Target:  5'- cGGGGGCGgGCUCGGGcCCCGgGGGCGUg -3'
miRNA:   3'- -UUCUUGCgCGGGUCC-GGGCgUUUGUA- -5'
5859 5' -57.9 NC_001806.1 + 102625 0.73 0.402568
Target:  5'- gAGGGACGCGUgCCGGGCCCG-GAGCu- -3'
miRNA:   3'- -UUCUUGCGCG-GGUCCGGGCgUUUGua -5'
5859 5' -57.9 NC_001806.1 + 99223 0.72 0.420137
Target:  5'- ---cACGcCGCCUcGGCCCGCGAACGg -3'
miRNA:   3'- uucuUGC-GCGGGuCCGGGCGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 95446 0.72 0.447339
Target:  5'- -cGGugGuCGCCCccGGGCCCGCcAACAc -3'
miRNA:   3'- uuCUugC-GCGGG--UCCGGGCGuUUGUa -5'
5859 5' -57.9 NC_001806.1 + 78200 0.72 0.456622
Target:  5'- gGAGGAggUGCGgaCCCAGGCCCGuCGGGCGa -3'
miRNA:   3'- -UUCUU--GCGC--GGGUCCGGGC-GUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 42717 0.72 0.456622
Target:  5'- gGGGGAggUGCGCCUGGGCCaggGCGAACAc -3'
miRNA:   3'- -UUCUU--GCGCGGGUCCGGg--CGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 76584 0.71 0.466008
Target:  5'- gAAGAugGCgGCCCAGcgcGCCCGCAGu--- -3'
miRNA:   3'- -UUCUugCG-CGGGUC---CGGGCGUUugua -5'
5859 5' -57.9 NC_001806.1 + 66289 0.71 0.475492
Target:  5'- -uGGACGCGCCUcccgggGGGUCgGCAGGCGa -3'
miRNA:   3'- uuCUUGCGCGGG------UCCGGgCGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 51195 0.71 0.475492
Target:  5'- cGAGGACGCGCuCCAGcuGCaCGCAGGCGa -3'
miRNA:   3'- -UUCUUGCGCG-GGUC--CGgGCGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 129486 0.71 0.475492
Target:  5'- cGGGcgcCGCGCCCAGGCCgGCc-GCGUg -3'
miRNA:   3'- uUCUu--GCGCGGGUCCGGgCGuuUGUA- -5'
5859 5' -57.9 NC_001806.1 + 17011 0.71 0.48411
Target:  5'- -uGGGCGCGCCUacccgggGGGCCCG-AAGCAc -3'
miRNA:   3'- uuCUUGCGCGGG-------UCCGGGCgUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 59292 0.71 0.485072
Target:  5'- -uGGACGCGCauCCGGGCgCGUGGACGUc -3'
miRNA:   3'- uuCUUGCGCG--GGUCCGgGCGUUUGUA- -5'
5859 5' -57.9 NC_001806.1 + 130355 0.71 0.494743
Target:  5'- -cGAGCGC-CgCCGGGCCCGCGcGGCGg -3'
miRNA:   3'- uuCUUGCGcG-GGUCCGGGCGU-UUGUa -5'
5859 5' -57.9 NC_001806.1 + 26424 0.71 0.504501
Target:  5'- --uGACGCGCCgCGGGCCCccggccgccGCGGACGc -3'
miRNA:   3'- uucUUGCGCGG-GUCCGGG---------CGUUUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.