miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5859 5' -57.9 NC_001806.1 + 657 0.66 0.767864
Target:  5'- aGAGAGCGUGCCgGGGUgguagaguuugaCagGCAAGCAUg -3'
miRNA:   3'- -UUCUUGCGCGGgUCCG------------Gg-CGUUUGUA- -5'
5859 5' -57.9 NC_001806.1 + 732 0.68 0.678073
Target:  5'- uGGGACgGCGCCCguGGGCCCG--GGCGg -3'
miRNA:   3'- uUCUUG-CGCGGG--UCCGGGCguUUGUa -5'
5859 5' -57.9 NC_001806.1 + 1307 0.66 0.786701
Target:  5'- cGGAACcgaGCCCGgucGGCCCGCucGCGg -3'
miRNA:   3'- uUCUUGcg-CGGGU---CCGGGCGuuUGUa -5'
5859 5' -57.9 NC_001806.1 + 1370 0.68 0.667779
Target:  5'- cGGGcACGgGCCuCGGGCCC-CAGGCAc -3'
miRNA:   3'- -UUCuUGCgCGG-GUCCGGGcGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 2460 0.66 0.79591
Target:  5'- uGGGGGCG-GCCCucAGGCCgGCGggUAc -3'
miRNA:   3'- -UUCUUGCgCGGG--UCCGGgCGUuuGUa -5'
5859 5' -57.9 NC_001806.1 + 7687 0.69 0.605691
Target:  5'- -cGGGCGCGUCCGGGUgCCGCGGc--- -3'
miRNA:   3'- uuCUUGCGCGGGUCCG-GGCGUUugua -5'
5859 5' -57.9 NC_001806.1 + 8835 0.66 0.758255
Target:  5'- -cGAGCG-GCCC-GGCCCGCGc---- -3'
miRNA:   3'- uuCUUGCgCGGGuCCGGGCGUuugua -5'
5859 5' -57.9 NC_001806.1 + 10346 0.68 0.657454
Target:  5'- cAGAG-GCGCCgAGGUcgCCGCAGGCGa -3'
miRNA:   3'- uUCUUgCGCGGgUCCG--GGCGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 13588 0.67 0.728782
Target:  5'- -----aGCGCCCGGGCCUGgAuGCGa -3'
miRNA:   3'- uucuugCGCGGGUCCGGGCgUuUGUa -5'
5859 5' -57.9 NC_001806.1 + 15305 0.69 0.585071
Target:  5'- -cGcACGCGUaguggGGGCCCGCGAGCGUg -3'
miRNA:   3'- uuCuUGCGCGgg---UCCGGGCGUUUGUA- -5'
5859 5' -57.9 NC_001806.1 + 16484 0.69 0.623283
Target:  5'- gAAGcuGCgGCGCCCGcccccccugguccuGGCCCGCAGACc- -3'
miRNA:   3'- -UUCu-UG-CGCGGGU--------------CCGGGCGUUUGua -5'
5859 5' -57.9 NC_001806.1 + 17011 0.71 0.48411
Target:  5'- -uGGGCGCGCCUacccgggGGGCCCG-AAGCAc -3'
miRNA:   3'- uuCUUGCGCGGG-------UCCGGGCgUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 22181 0.71 0.504501
Target:  5'- cGGGGCGCGCUCGGaGCCCGUcuuuACGc -3'
miRNA:   3'- uUCUUGCGCGGGUC-CGGGCGuu--UGUa -5'
5859 5' -57.9 NC_001806.1 + 25389 0.66 0.79591
Target:  5'- gGAGGACgGCGCCgGGGCucucggggCCGCAGGa-- -3'
miRNA:   3'- -UUCUUG-CGCGGgUCCG--------GGCGUUUgua -5'
5859 5' -57.9 NC_001806.1 + 25769 0.66 0.758255
Target:  5'- -cGGGCGCGuCCCcGGCCCGgAGGa-- -3'
miRNA:   3'- uuCUUGCGC-GGGuCCGGGCgUUUgua -5'
5859 5' -57.9 NC_001806.1 + 26424 0.71 0.504501
Target:  5'- --uGACGCGCCgCGGGCCCccggccgccGCGGACGc -3'
miRNA:   3'- uucUUGCGCGG-GUCCGGG---------CGUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 32648 0.68 0.682181
Target:  5'- cGGGGGCcgcuuuguggccccaGCGCCCcacGGGCCCGgGGGCGa -3'
miRNA:   3'- -UUCUUG---------------CGCGGG---UCCGGGCgUUUGUa -5'
5859 5' -57.9 NC_001806.1 + 37146 0.74 0.314687
Target:  5'- -cGggUGCGCCCAGGUgCCGCGGcgcGCAg -3'
miRNA:   3'- uuCuuGCGCGGGUCCG-GGCGUU---UGUa -5'
5859 5' -57.9 NC_001806.1 + 37731 0.69 0.595367
Target:  5'- -cGAACGCGCCCAauuuccccccGGCCCuGCGcgaccugucgcGGCAg -3'
miRNA:   3'- uuCUUGCGCGGGU----------CCGGG-CGU-----------UUGUa -5'
5859 5' -57.9 NC_001806.1 + 39117 0.66 0.786701
Target:  5'- uGGGGGCaGCGCCU-GGCCCaCGGGCGg -3'
miRNA:   3'- -UUCUUG-CGCGGGuCCGGGcGUUUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.