Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5867 | 3' | -53.6 | NC_001806.1 | + | 59583 | 0.76 | 0.512402 |
Target: 5'- cGGCUCCUGu-CGCGCGAggacaUCGAGAc- -3' miRNA: 3'- aCCGAGGGCuuGCGCGCU-----AGCUUUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 22187 | 0.75 | 0.572843 |
Target: 5'- cGGCUCCgGGGCGCGC--UCGGAGc- -3' miRNA: 3'- aCCGAGGgCUUGCGCGcuAGCUUUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 32083 | 0.75 | 0.593402 |
Target: 5'- uUGGC-CCCGAccaacGCGCGUGGUUGggGg- -3' miRNA: 3'- -ACCGaGGGCU-----UGCGCGCUAGCuuUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 53667 | 0.74 | 0.614077 |
Target: 5'- gGGCgacCUgGGGCGCGCGGUCGGcaaGGUGg -3' miRNA: 3'- aCCGa--GGgCUUGCGCGCUAGCU---UUAC- -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 127568 | 0.74 | 0.634807 |
Target: 5'- cGGCccggCCCGGugGCGCGGgccgCGGAGg- -3' miRNA: 3'- aCCGa---GGGCUugCGCGCUa---GCUUUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 149735 | 0.74 | 0.655528 |
Target: 5'- gGGCgggCCCGGcgcaccGCGCgGCGAUCGAGGc- -3' miRNA: 3'- aCCGa--GGGCU------UGCG-CGCUAGCUUUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 73581 | 0.72 | 0.716943 |
Target: 5'- aGuGCUCCUGGGCGCGCccGUCGucGUGg -3' miRNA: 3'- aC-CGAGGGCUUGCGCGc-UAGCuuUAC- -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 76907 | 0.72 | 0.746773 |
Target: 5'- uUGGC-CCUGGACGCGCGggUGGc--- -3' miRNA: 3'- -ACCGaGGGCUUGCGCGCuaGCUuuac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 119139 | 0.71 | 0.775673 |
Target: 5'- cGGggCCCGGAcCGcCGCGGUCGggGg- -3' miRNA: 3'- aCCgaGGGCUU-GC-GCGCUAGCuuUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 1227 | 0.71 | 0.803389 |
Target: 5'- gUGGCgcaCCCGGACGUGgGG-CGAGAa- -3' miRNA: 3'- -ACCGa--GGGCUUGCGCgCUaGCUUUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 118879 | 0.71 | 0.812322 |
Target: 5'- cGGCaCCCGGACGCGCc--CGGAAa- -3' miRNA: 3'- aCCGaGGGCUUGCGCGcuaGCUUUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 51512 | 0.7 | 0.84629 |
Target: 5'- aGGUgcgCCCGGACaGCGCGAgcUCGGc--- -3' miRNA: 3'- aCCGa--GGGCUUG-CGCGCU--AGCUuuac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 76019 | 0.7 | 0.84629 |
Target: 5'- gGGCcgaCgCGcGGCGCGCGAUCGGAAg- -3' miRNA: 3'- aCCGa--GgGC-UUGCGCGCUAGCUUUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 56871 | 0.7 | 0.854302 |
Target: 5'- gGaGCUCCCGGGgGCGgGggCGAGGa- -3' miRNA: 3'- aC-CGAGGGCUUgCGCgCuaGCUUUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 136537 | 0.7 | 0.854302 |
Target: 5'- gGGCgauuguUCCCGGcCGCGCGGgagcgguagcgCGAGGUGa -3' miRNA: 3'- aCCG------AGGGCUuGCGCGCUa----------GCUUUAC- -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 102965 | 0.69 | 0.862107 |
Target: 5'- aGGCccgcgagCCCGAcgacgGCGCGCG-UCGGAAg- -3' miRNA: 3'- aCCGa------GGGCU-----UGCGCGCuAGCUUUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 90745 | 0.69 | 0.877074 |
Target: 5'- cUGGCggaacagCCCGuACaCGCGGUCGGGcgGg -3' miRNA: 3'- -ACCGa------GGGCuUGcGCGCUAGCUUuaC- -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 51382 | 0.69 | 0.881391 |
Target: 5'- aGGCgccgCCCGAucgcgcacagcgcgACGUgcgcgaacagcguGCGAUCGggGUGc -3' miRNA: 3'- aCCGa---GGGCU--------------UGCG-------------CGCUAGCuuUAC- -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 142245 | 0.69 | 0.889092 |
Target: 5'- gGGCUCcaugugagccucggCCGAACaGCGCGGUgGggGg- -3' miRNA: 3'- aCCGAG--------------GGCUUG-CGCGCUAgCuuUac -5' |
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5867 | 3' | -53.6 | NC_001806.1 | + | 144534 | 0.69 | 0.891144 |
Target: 5'- gGGCcuucUUUCGAAC-CGUGGUCGAGGUGu -3' miRNA: 3'- aCCG----AGGGCUUGcGCGCUAGCUUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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