miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5867 3' -53.6 NC_001806.1 + 1227 0.71 0.803389
Target:  5'- gUGGCgcaCCCGGACGUGgGG-CGAGAa- -3'
miRNA:   3'- -ACCGa--GGGCUUGCGCgCUaGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 20112 0.66 0.970427
Target:  5'- cGGCgcgcguugccgagcaUCCCG-ACGCGCGGcUGgcGUGg -3'
miRNA:   3'- aCCG---------------AGGGCuUGCGCGCUaGCuuUAC- -5'
5867 3' -53.6 NC_001806.1 + 22187 0.75 0.572843
Target:  5'- cGGCUCCgGGGCGCGC--UCGGAGc- -3'
miRNA:   3'- aCCGAGGgCUUGCGCGcuAGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 23711 0.67 0.951385
Target:  5'- cGGCggCCCGcguccAGgGCGCGGUCGuAGcgGg -3'
miRNA:   3'- aCCGa-GGGC-----UUgCGCGCUAGC-UUuaC- -5'
5867 3' -53.6 NC_001806.1 + 28861 0.67 0.937878
Target:  5'- cGGCuaaagUCCCGcGCGCGCuua-GAGAUGa -3'
miRNA:   3'- aCCG-----AGGGCuUGCGCGcuagCUUUAC- -5'
5867 3' -53.6 NC_001806.1 + 32083 0.75 0.593402
Target:  5'- uUGGC-CCCGAccaacGCGCGUGGUUGggGg- -3'
miRNA:   3'- -ACCGaGGGCU-----UGCGCGCUAGCuuUac -5'
5867 3' -53.6 NC_001806.1 + 37453 0.66 0.962769
Target:  5'- -uGUUCUCgGAGCGCGCG-UCGGAGg- -3'
miRNA:   3'- acCGAGGG-CUUGCGCGCuAGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 38571 0.66 0.969237
Target:  5'- cGGgaCCUGGugGCGCacGUCGAGGc- -3'
miRNA:   3'- aCCgaGGGCUugCGCGc-UAGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 51382 0.69 0.881391
Target:  5'- aGGCgccgCCCGAucgcgcacagcgcgACGUgcgcgaacagcguGCGAUCGggGUGc -3'
miRNA:   3'- aCCGa---GGGCU--------------UGCG-------------CGCUAGCuuUAC- -5'
5867 3' -53.6 NC_001806.1 + 51512 0.7 0.84629
Target:  5'- aGGUgcgCCCGGACaGCGCGAgcUCGGc--- -3'
miRNA:   3'- aCCGa--GGGCUUG-CGCGCU--AGCUuuac -5'
5867 3' -53.6 NC_001806.1 + 53667 0.74 0.614077
Target:  5'- gGGCgacCUgGGGCGCGCGGUCGGcaaGGUGg -3'
miRNA:   3'- aCCGa--GGgCUUGCGCGCUAGCU---UUAC- -5'
5867 3' -53.6 NC_001806.1 + 56871 0.7 0.854302
Target:  5'- gGaGCUCCCGGGgGCGgGggCGAGGa- -3'
miRNA:   3'- aC-CGAGGGCUUgCGCgCuaGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 59583 0.76 0.512402
Target:  5'- cGGCUCCUGu-CGCGCGAggacaUCGAGAc- -3'
miRNA:   3'- aCCGAGGGCuuGCGCGCU-----AGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 60478 0.69 0.891144
Target:  5'- cGGC-CCUGaAGCGCGCGGaCGGAu-- -3'
miRNA:   3'- aCCGaGGGC-UUGCGCGCUaGCUUuac -5'
5867 3' -53.6 NC_001806.1 + 61821 0.66 0.962769
Target:  5'- aGGC-CCCGAACcugaCGCGAcuuugCGAGcgGg -3'
miRNA:   3'- aCCGaGGGCUUGc---GCGCUa----GCUUuaC- -5'
5867 3' -53.6 NC_001806.1 + 65809 0.69 0.897831
Target:  5'- gGGC-CCUGGAgGUGCGGUUGAu--- -3'
miRNA:   3'- aCCGaGGGCUUgCGCGCUAGCUuuac -5'
5867 3' -53.6 NC_001806.1 + 73581 0.72 0.716943
Target:  5'- aGuGCUCCUGGGCGCGCccGUCGucGUGg -3'
miRNA:   3'- aC-CGAGGGCUUGCGCGc-UAGCuuUAC- -5'
5867 3' -53.6 NC_001806.1 + 76019 0.7 0.84629
Target:  5'- gGGCcgaCgCGcGGCGCGCGAUCGGAAg- -3'
miRNA:   3'- aCCGa--GgGC-UUGCGCGCUAGCUUUac -5'
5867 3' -53.6 NC_001806.1 + 76907 0.72 0.746773
Target:  5'- uUGGC-CCUGGACGCGCGggUGGc--- -3'
miRNA:   3'- -ACCGaGGGCUUGCGCGCuaGCUuuac -5'
5867 3' -53.6 NC_001806.1 + 87661 0.66 0.969237
Target:  5'- aGGCgcugcaucUCCaCGAGCGCGUaGUUGAGAa- -3'
miRNA:   3'- aCCG--------AGG-GCUUGCGCGcUAGCUUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.