miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5868 5' -57.7 NC_001806.1 + 98990 0.82 0.140639
Target:  5'- gCCC-CCGCCCCCGCCGUuGAGC-CCCu -3'
miRNA:   3'- -GGGuGGCGGGGGUGGUA-UUUGaGGGc -5'
5868 5' -57.7 NC_001806.1 + 125744 0.81 0.176028
Target:  5'- gCCGCCGcCCCCCGCCGgUGGGCcCCCGc -3'
miRNA:   3'- gGGUGGC-GGGGGUGGU-AUUUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 125881 0.8 0.194167
Target:  5'- gCCCGCCGCCgCCGCCAUcgcGGCcCCCGc -3'
miRNA:   3'- -GGGUGGCGGgGGUGGUAu--UUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 151276 0.79 0.224433
Target:  5'- cCCCucCCGCCCCCGCCcc---CUCCCGc -3'
miRNA:   3'- -GGGu-GGCGGGGGUGGuauuuGAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 151427 0.79 0.224433
Target:  5'- aCCACCGCCCCuCGCCcc---CUCCCGc -3'
miRNA:   3'- gGGUGGCGGGG-GUGGuauuuGAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 20180 0.79 0.22985
Target:  5'- gCCCGCCGCCCCUcgcGCCGcu--CUCCUGg -3'
miRNA:   3'- -GGGUGGCGGGGG---UGGUauuuGAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 72633 0.78 0.246768
Target:  5'- cCCCGCC-CCCCCGCCuc---CUCCCGc -3'
miRNA:   3'- -GGGUGGcGGGGGUGGuauuuGAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 105902 0.78 0.250861
Target:  5'- -gCACCGCCCCCccaaaccccgacgcGCCAUGGACccCCCGg -3'
miRNA:   3'- ggGUGGCGGGGG--------------UGGUAUUUGa-GGGC- -5'
5868 5' -57.7 NC_001806.1 + 125600 0.77 0.27724
Target:  5'- gCCCACCGCCgCCGCCccccGGC-CCCGg -3'
miRNA:   3'- -GGGUGGCGGgGGUGGuau-UUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 32327 0.77 0.309944
Target:  5'- gCCGCagaacgcgucgugCGCCCCCACCAgcuguCUCCCGc -3'
miRNA:   3'- gGGUG-------------GCGGGGGUGGUauuu-GAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 36239 0.77 0.310641
Target:  5'- gCCGCUGaCCCCCACCGcgcucCUCCCGc -3'
miRNA:   3'- gGGUGGC-GGGGGUGGUauuu-GAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 8309 0.77 0.310641
Target:  5'- cCCCGCCcacGCCCCCGCCccu-GC-CCCGg -3'
miRNA:   3'- -GGGUGG---CGGGGGUGGuauuUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 70825 0.76 0.347015
Target:  5'- gCCGCCGCCUgaCCGCgGagAAACUCCCGc -3'
miRNA:   3'- gGGUGGCGGG--GGUGgUa-UUUGAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 105073 0.76 0.354646
Target:  5'- gCCACCGCCCCCccgcCCGgccgGGGgUCCCa -3'
miRNA:   3'- gGGUGGCGGGGGu---GGUa---UUUgAGGGc -5'
5868 5' -57.7 NC_001806.1 + 11073 0.76 0.354646
Target:  5'- aCCCAaaaGCCCCCACCGacaaAAAC-CCCGg -3'
miRNA:   3'- -GGGUgg-CGGGGGUGGUa---UUUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 151671 0.75 0.360836
Target:  5'- aCCACCGCCCCCuccCCAgccccagccCUCCCc -3'
miRNA:   3'- gGGUGGCGGGGGu--GGUauuu-----GAGGGc -5'
5868 5' -57.7 NC_001806.1 + 52365 0.75 0.362395
Target:  5'- gUCACCGCCCCCaucagcGCCGUGAuggucucguuGgUCCCGg -3'
miRNA:   3'- gGGUGGCGGGGG------UGGUAUU----------UgAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 73643 0.75 0.37026
Target:  5'- gCCGCCGCCaCCCACCGc--ACcCCCGc -3'
miRNA:   3'- gGGUGGCGG-GGGUGGUauuUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 122049 0.75 0.37026
Target:  5'- aCCCGCgCGCCCCCGCgCGgccguGGC-CCCGu -3'
miRNA:   3'- -GGGUG-GCGGGGGUG-GUau---UUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 31431 0.75 0.37026
Target:  5'- cCCC-CCGCCCCCGgCAUGgcgcagcuggGAC-CCCGg -3'
miRNA:   3'- -GGGuGGCGGGGGUgGUAU----------UUGaGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.