miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5868 5' -57.7 NC_001806.1 + 272 0.69 0.727578
Target:  5'- cCCC-CCGCUCCUcCCccc-GCUCCCGc -3'
miRNA:   3'- -GGGuGGCGGGGGuGGuauuUGAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 551 0.68 0.73622
Target:  5'- gCCCGCCGCCaCCGCUuUAaagggccgcgcgcGACcCCCGg -3'
miRNA:   3'- -GGGUGGCGGgGGUGGuAU-------------UUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 1334 0.68 0.76541
Target:  5'- aCCGCCucgGCCUCCGCCAcccggcgccgGAACcgagCCCGg -3'
miRNA:   3'- gGGUGG---CGGGGGUGGUa---------UUUGa---GGGC- -5'
5868 5' -57.7 NC_001806.1 + 1588 0.67 0.81009
Target:  5'- cCCCGCCGCgCUggcggCCGCCGauGGCcagUCCCGc -3'
miRNA:   3'- -GGGUGGCG-GG-----GGUGGUauUUG---AGGGC- -5'
5868 5' -57.7 NC_001806.1 + 2127 0.68 0.750464
Target:  5'- aCCCGgCGCCCCCAaagaauaucauuagCAUGcACggCCCGg -3'
miRNA:   3'- -GGGUgGCGGGGGUg-------------GUAUuUGa-GGGC- -5'
5868 5' -57.7 NC_001806.1 + 2909 0.68 0.774606
Target:  5'- aCCA-CGCCCCCAacaCGgcGAC-CCCGg -3'
miRNA:   3'- gGGUgGCGGGGGUg--GUauUUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 3320 0.7 0.628661
Target:  5'- cCCCGCC-CCCCCACUucgguCUCCg- -3'
miRNA:   3'- -GGGUGGcGGGGGUGGuauuuGAGGgc -5'
5868 5' -57.7 NC_001806.1 + 3435 0.72 0.529832
Target:  5'- cCCCgagACCGCCCCC-CCAUccACgCCCu -3'
miRNA:   3'- -GGG---UGGCGGGGGuGGUAuuUGaGGGc -5'
5868 5' -57.7 NC_001806.1 + 4706 0.67 0.792625
Target:  5'- cCCCgaGCCGCgCgCCACCGUcgcACgcgCCCGg -3'
miRNA:   3'- -GGG--UGGCGgG-GGUGGUAuu-UGa--GGGC- -5'
5868 5' -57.7 NC_001806.1 + 5401 0.67 0.835111
Target:  5'- aCCGCgGCCCgcagccgggUCGCCAUGu-UUCCCGu -3'
miRNA:   3'- gGGUGgCGGG---------GGUGGUAUuuGAGGGC- -5'
5868 5' -57.7 NC_001806.1 + 6266 0.69 0.727578
Target:  5'- cCCCGucCCG-CCCCGCCAccc-CUCCCa -3'
miRNA:   3'- -GGGU--GGCgGGGGUGGUauuuGAGGGc -5'
5868 5' -57.7 NC_001806.1 + 6472 0.67 0.818595
Target:  5'- -gCACCGCCCCCccuccuucauACCAccGAGCaugCCUGg -3'
miRNA:   3'- ggGUGGCGGGGG----------UGGUa-UUUGa--GGGC- -5'
5868 5' -57.7 NC_001806.1 + 7268 0.67 0.792625
Target:  5'- aCCCAagggGCCCCgGCCcgGGGC-CCCa -3'
miRNA:   3'- -GGGUgg--CGGGGgUGGuaUUUGaGGGc -5'
5868 5' -57.7 NC_001806.1 + 7316 0.67 0.826938
Target:  5'- aCCGCCaacggccgGCCCCCguggcggcccgGCCcgGGGC-CCCGg -3'
miRNA:   3'- gGGUGG--------CGGGGG-----------UGGuaUUUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 7920 0.68 0.78368
Target:  5'- gCCCcCCGCCCCgCGCCGguccauuaaGGGCgcgcgugCCCGc -3'
miRNA:   3'- -GGGuGGCGGGG-GUGGUa--------UUUGa------GGGC- -5'
5868 5' -57.7 NC_001806.1 + 8309 0.77 0.310641
Target:  5'- cCCCGCCcacGCCCCCGCCccu-GC-CCCGg -3'
miRNA:   3'- -GGGUGG---CGGGGGUGGuauuUGaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 8352 0.71 0.608659
Target:  5'- aCCCACCccacGCCCCCACUgag----CCCGg -3'
miRNA:   3'- -GGGUGG----CGGGGGUGGuauuugaGGGC- -5'
5868 5' -57.7 NC_001806.1 + 8392 0.74 0.411301
Target:  5'- aCCCACCGacaCCCCCACCccaguCUCCUc -3'
miRNA:   3'- -GGGUGGC---GGGGGUGGuauuuGAGGGc -5'
5868 5' -57.7 NC_001806.1 + 8580 0.67 0.818595
Target:  5'- gCCC-CCGggaCCCCACaUAUAAGCcCCCa -3'
miRNA:   3'- -GGGuGGCg--GGGGUG-GUAUUUGaGGGc -5'
5868 5' -57.7 NC_001806.1 + 8612 0.75 0.37026
Target:  5'- gCgCGCCGcCCCCCGCCGcUAAACcccaUCCCGc -3'
miRNA:   3'- -GgGUGGC-GGGGGUGGU-AUUUG----AGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.