miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5870 3' -68.6 NC_001806.1 + 49922 0.83 0.025215
Target:  5'- gUCCCGGGGgacguCCCCCgGGGCCGCCGGgaGCa -3'
miRNA:   3'- -AGGGCCCC-----GGGGG-CCCGGCGGCU--UGc -5'
5870 3' -68.6 NC_001806.1 + 128806 0.82 0.029297
Target:  5'- gCCCGcGGCgCCCCGGGCCGCCGcGGCGc -3'
miRNA:   3'- aGGGCcCCG-GGGGCCCGGCGGC-UUGC- -5'
5870 3' -68.6 NC_001806.1 + 74727 0.81 0.034888
Target:  5'- gCCCGGGGCCCCUGGuGCUGCgCGAGg- -3'
miRNA:   3'- aGGGCCCCGGGGGCC-CGGCG-GCUUgc -5'
5870 3' -68.6 NC_001806.1 + 95211 0.79 0.047003
Target:  5'- -gCCGGGGCCCCCGGcuGCgUGCCGGGCu -3'
miRNA:   3'- agGGCCCCGGGGGCC--CG-GCGGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 74302 0.79 0.048181
Target:  5'- aCgCGGcGGCCCCgGGGCCGCCGcuCGg -3'
miRNA:   3'- aGgGCC-CCGGGGgCCCGGCGGCuuGC- -5'
5870 3' -68.6 NC_001806.1 + 119278 0.79 0.048181
Target:  5'- -gCCGGGGCCCcgggCCGGGCCGCC--ACGg -3'
miRNA:   3'- agGGCCCCGGG----GGCCCGGCGGcuUGC- -5'
5870 3' -68.6 NC_001806.1 + 45572 0.79 0.049387
Target:  5'- cCCCgGGGGCUcuuCCCGGGCCcCCGGGCGg -3'
miRNA:   3'- aGGG-CCCCGG---GGGCCCGGcGGCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 22602 0.79 0.051889
Target:  5'- gCCCuGcGCCcgCCCGGGCCGCCGAGCGg -3'
miRNA:   3'- aGGGcCcCGG--GGGCCCGGCGGCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 146417 0.79 0.053186
Target:  5'- cCCCGGGcCCCCCGGucccgcCCGCCGGACGc -3'
miRNA:   3'- aGGGCCCcGGGGGCCc-----GGCGGCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 84751 0.78 0.061652
Target:  5'- cCCUGGGGagCCCUGGGCCGUCGcGGCGa -3'
miRNA:   3'- aGGGCCCCg-GGGGCCCGGCGGC-UUGC- -5'
5870 3' -68.6 NC_001806.1 + 26418 0.77 0.064754
Target:  5'- -gCCGcGGGCCCCC-GGCCGCCGcgGACGc -3'
miRNA:   3'- agGGC-CCCGGGGGcCCGGCGGC--UUGC- -5'
5870 3' -68.6 NC_001806.1 + 31401 0.77 0.066361
Target:  5'- cCCCGGcGGCCCCUGGcGCCGCCu---- -3'
miRNA:   3'- aGGGCC-CCGGGGGCC-CGGCGGcuugc -5'
5870 3' -68.6 NC_001806.1 + 98135 0.76 0.082654
Target:  5'- gUCCCGGGGCCCagGGGCCGgUaGGCGu -3'
miRNA:   3'- -AGGGCCCCGGGggCCCGGCgGcUUGC- -5'
5870 3' -68.6 NC_001806.1 + 131120 0.76 0.082654
Target:  5'- cUCCCcGGGCCCCaccgaCGGGCCGCCGccCa -3'
miRNA:   3'- -AGGGcCCCGGGG-----GCCCGGCGGCuuGc -5'
5870 3' -68.6 NC_001806.1 + 150815 0.76 0.086763
Target:  5'- -gCCGgcggcaGGGCCCCCGGGCCGUCGu-CGu -3'
miRNA:   3'- agGGC------CCCGGGGGCCCGGCGGCuuGC- -5'
5870 3' -68.6 NC_001806.1 + 58671 0.75 0.0979
Target:  5'- gCCCGGGGgCCCCGGGaCCggcauuugccgGCCGcaAACGg -3'
miRNA:   3'- aGGGCCCCgGGGGCCC-GG-----------CGGC--UUGC- -5'
5870 3' -68.6 NC_001806.1 + 130379 0.75 0.100284
Target:  5'- cCCCGcGGCCuCCgCGGGCCGCauCGAGCGc -3'
miRNA:   3'- aGGGCcCCGG-GG-GCCCGGCG--GCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 72400 0.75 0.105218
Target:  5'- cUCCCGcucGGGCCCCa-GGCCGCCGGcCa -3'
miRNA:   3'- -AGGGC---CCCGGGGgcCCGGCGGCUuGc -5'
5870 3' -68.6 NC_001806.1 + 80306 0.75 0.105218
Target:  5'- -aCCGcGGG-CCCUGGGCCGCCGcGCa -3'
miRNA:   3'- agGGC-CCCgGGGGCCCGGCGGCuUGc -5'
5870 3' -68.6 NC_001806.1 + 149339 0.74 0.107769
Target:  5'- gUCgCGGGccgccGCCUCCGGGCgGCCGGGCc -3'
miRNA:   3'- -AGgGCCC-----CGGGGGCCCGgCGGCUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.