miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5870 3' -68.6 NC_001806.1 + 569 0.66 0.383673
Target:  5'- gCCgGGGGggCCCGGGCUGCCc---- -3'
miRNA:   3'- aGGgCCCCggGGGCCCGGCGGcuugc -5'
5870 3' -68.6 NC_001806.1 + 723 0.71 0.176532
Target:  5'- gCCCGuGGGCCC--GGGCgGCCGGggGCGg -3'
miRNA:   3'- aGGGC-CCCGGGggCCCGgCGGCU--UGC- -5'
5870 3' -68.6 NC_001806.1 + 949 0.66 0.406808
Target:  5'- -gCC-GGGCCUCUGGcGCCGgCuCGGGCGg -3'
miRNA:   3'- agGGcCCCGGGGGCC-CGGC-G-GCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 1009 0.74 0.115776
Target:  5'- cCCCGc--CCCCCGGGCCcacGCCGGGCGg -3'
miRNA:   3'- aGGGCcccGGGGGCCCGG---CGGCUUGC- -5'
5870 3' -68.6 NC_001806.1 + 1285 0.66 0.398999
Target:  5'- gCUCGcGGGCCCacgagCCGcGGCgCGCCaGGCGg -3'
miRNA:   3'- aGGGC-CCCGGG-----GGC-CCG-GCGGcUUGC- -5'
5870 3' -68.6 NC_001806.1 + 1400 0.66 0.383673
Target:  5'- uUCgCCGGGccgGCUCCgCGGGCCagggcCCGGGCa -3'
miRNA:   3'- -AG-GGCCC---CGGGG-GCCCGGc----GGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 1455 0.68 0.293936
Target:  5'- cUCCCGGGaGCUccgcggaagaCCCaGGCCGCCucGggUGu -3'
miRNA:   3'- -AGGGCCC-CGG----------GGGcCCGGCGG--CuuGC- -5'
5870 3' -68.6 NC_001806.1 + 1594 0.7 0.220938
Target:  5'- -gCCGGGcCCCgCCGcgcuggcGGCCGCCGAugGc -3'
miRNA:   3'- agGGCCCcGGG-GGC-------CCGGCGGCUugC- -5'
5870 3' -68.6 NC_001806.1 + 1808 0.68 0.275701
Target:  5'- -aCCGGGGUugCCCauuaaGGGCCGCgGGAa- -3'
miRNA:   3'- agGGCCCCG--GGGg----CCCGGCGgCUUgc -5'
5870 3' -68.6 NC_001806.1 + 4347 0.67 0.326391
Target:  5'- gCCCGuccGGCCCCUcGGCCGCCccGCc -3'
miRNA:   3'- aGGGCc--CCGGGGGcCCGGCGGcuUGc -5'
5870 3' -68.6 NC_001806.1 + 4607 0.67 0.357088
Target:  5'- gUCCgCGGGGCgggcggccggcuccgCCCCGGGg-GCCGGggcGCGg -3'
miRNA:   3'- -AGG-GCCCCG---------------GGGGCCCggCGGCU---UGC- -5'
5870 3' -68.6 NC_001806.1 + 4957 0.66 0.404455
Target:  5'- gUCCCGGGcccacccuggccgcGCCCCCccGGCC-CUGAGuCGg -3'
miRNA:   3'- -AGGGCCC--------------CGGGGGc-CCGGcGGCUU-GC- -5'
5870 3' -68.6 NC_001806.1 + 5052 0.66 0.413917
Target:  5'- cCCCGGcggcggaagaggcGGCCCCCgcggGGGUCgggGCCGAGg- -3'
miRNA:   3'- aGGGCC-------------CCGGGGG----CCCGG---CGGCUUgc -5'
5870 3' -68.6 NC_001806.1 + 7285 0.7 0.215568
Target:  5'- gCCCGGGGCCCCggcggacccaagGGGCC-CCGGccCGg -3'
miRNA:   3'- aGGGCCCCGGGGg-----------CCCGGcGGCUu-GC- -5'
5870 3' -68.6 NC_001806.1 + 7346 0.7 0.216536
Target:  5'- gCCCGGGGCCugagaugaacaCUCGGGguuaCCGCC-AACGg -3'
miRNA:   3'- aGGGCCCCGG-----------GGGCCC----GGCGGcUUGC- -5'
5870 3' -68.6 NC_001806.1 + 7451 0.69 0.263483
Target:  5'- gCCCgggacgaGGGGCCCCCGaccgcGGCgGuCCGGGCc -3'
miRNA:   3'- aGGG-------CCCCGGGGGC-----CCGgC-GGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 7665 0.68 0.313098
Target:  5'- cUCUCcGGGCCCCCcugcagccgGGGCgGCCaagGGGCGu -3'
miRNA:   3'- -AGGGcCCCGGGGG---------CCCGgCGG---CUUGC- -5'
5870 3' -68.6 NC_001806.1 + 8286 0.66 0.368742
Target:  5'- cCCCGGcGaCCCCCGGcCCGCaCGAuccCGa -3'
miRNA:   3'- aGGGCCcC-GGGGGCCcGGCG-GCUu--GC- -5'
5870 3' -68.6 NC_001806.1 + 15604 0.66 0.414712
Target:  5'- cUCCCGGGcGUUCCUGuaCCGgCGAACc -3'
miRNA:   3'- -AGGGCCC-CGGGGGCccGGCgGCUUGc -5'
5870 3' -68.6 NC_001806.1 + 15733 0.7 0.211734
Target:  5'- gCuuGacGGGCCgCUCGGGCCGCCcGGCGc -3'
miRNA:   3'- aGggC--CCCGG-GGGCCCGGCGGcUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.