miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5874 3' -59.3 NC_001806.1 + 148755 0.82 0.12536
Target:  5'- -cGGCGUgGCgGGCGGCGUCGGggUCGu -3'
miRNA:   3'- ccCCGCGgUG-CCGCUGCAGCCuuAGC- -5'
5874 3' -59.3 NC_001806.1 + 147434 0.81 0.138469
Target:  5'- cGGGGCggcgagGCCGCGGgGucggGCGUCGGGAUCGu -3'
miRNA:   3'- -CCCCG------CGGUGCCgC----UGCAGCCUUAGC- -5'
5874 3' -59.3 NC_001806.1 + 51432 0.8 0.164466
Target:  5'- aGGGCGCgAUGGCGGCGUCGaGAccgguGUCGu -3'
miRNA:   3'- cCCCGCGgUGCCGCUGCAGC-CU-----UAGC- -5'
5874 3' -59.3 NC_001806.1 + 149466 0.79 0.194765
Target:  5'- cGGGGCGCCGCGGgcugGGCGggggCGGGcUCGg -3'
miRNA:   3'- -CCCCGCGGUGCCg---CUGCa---GCCUuAGC- -5'
5874 3' -59.3 NC_001806.1 + 61254 0.79 0.199473
Target:  5'- cGGGCGCgACGGCGGCGgcaaGGGcgCGg -3'
miRNA:   3'- cCCCGCGgUGCCGCUGCag--CCUuaGC- -5'
5874 3' -59.3 NC_001806.1 + 147513 0.77 0.246434
Target:  5'- cGGGGCccgGUCGCcGGCGGCGUCGGcugcGUCGu -3'
miRNA:   3'- -CCCCG---CGGUG-CCGCUGCAGCCu---UAGC- -5'
5874 3' -59.3 NC_001806.1 + 48459 0.77 0.246434
Target:  5'- gGGcGGCGCCgccGCGGCGGCGaCGGGcUCGc -3'
miRNA:   3'- -CC-CCGCGG---UGCCGCUGCaGCCUuAGC- -5'
5874 3' -59.3 NC_001806.1 + 4103 0.77 0.252183
Target:  5'- gGGGGCGCgGCGGCGccucuGCGUgGGGGggcgCGg -3'
miRNA:   3'- -CCCCGCGgUGCCGC-----UGCAgCCUUa---GC- -5'
5874 3' -59.3 NC_001806.1 + 147266 0.77 0.264012
Target:  5'- gGGGGUgGUCGgGGuCGugGUCGGggUCGu -3'
miRNA:   3'- -CCCCG-CGGUgCC-GCugCAGCCuuAGC- -5'
5874 3' -59.3 NC_001806.1 + 133478 0.77 0.264012
Target:  5'- cGGGUuCCGCGGUGGCGUC-GAAUCGa -3'
miRNA:   3'- cCCCGcGGUGCCGCUGCAGcCUUAGC- -5'
5874 3' -59.3 NC_001806.1 + 137176 0.76 0.302196
Target:  5'- cGGGGCG-CGCGGgGGaguUGUUGGGAUCGg -3'
miRNA:   3'- -CCCCGCgGUGCCgCU---GCAGCCUUAGC- -5'
5874 3' -59.3 NC_001806.1 + 77331 0.75 0.344498
Target:  5'- gGGGGCGCCcccugagguuACGGCGGCGcugCGGg--CGg -3'
miRNA:   3'- -CCCCGCGG----------UGCCGCUGCa--GCCuuaGC- -5'
5874 3' -59.3 NC_001806.1 + 58091 0.74 0.367191
Target:  5'- cGGGCGCUGCGGCGuCGUCuGAGgcCGg -3'
miRNA:   3'- cCCCGCGGUGCCGCuGCAGcCUUa-GC- -5'
5874 3' -59.3 NC_001806.1 + 69524 0.74 0.382881
Target:  5'- cGGGGCG--GCGGCGuCGUCGGGcgCu -3'
miRNA:   3'- -CCCCGCggUGCCGCuGCAGCCUuaGc -5'
5874 3' -59.3 NC_001806.1 + 148972 0.74 0.390085
Target:  5'- cGGGGCGCgucggcgUGCGGCGGCGgCGGGGaagCGg -3'
miRNA:   3'- -CCCCGCG-------GUGCCGCUGCaGCCUUa--GC- -5'
5874 3' -59.3 NC_001806.1 + 32707 0.74 0.390891
Target:  5'- gGGGGCGCCAUGGgGGCGgCuGAcgCa -3'
miRNA:   3'- -CCCCGCGGUGCCgCUGCaGcCUuaGc -5'
5874 3' -59.3 NC_001806.1 + 109631 0.74 0.390891
Target:  5'- --uGCGCCGCGGCGGCGUCGc-GUCc -3'
miRNA:   3'- cccCGCGGUGCCGCUGCAGCcuUAGc -5'
5874 3' -59.3 NC_001806.1 + 2838 0.73 0.424003
Target:  5'- gGGGGUcCCACGGCGaccccgggcccuGCGUCuGAGUCa -3'
miRNA:   3'- -CCCCGcGGUGCCGC------------UGCAGcCUUAGc -5'
5874 3' -59.3 NC_001806.1 + 150422 0.73 0.441176
Target:  5'- -aGGCGCaGCGGCGgcGCGUCGGggUa- -3'
miRNA:   3'- ccCCGCGgUGCCGC--UGCAGCCuuAgc -5'
5874 3' -59.3 NC_001806.1 + 817 0.72 0.458737
Target:  5'- cGGGGgGCgGCGGCGggGCGgccgCGGGcgCGc -3'
miRNA:   3'- -CCCCgCGgUGCCGC--UGCa---GCCUuaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.