miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5874 3' -59.3 NC_001806.1 + 694 0.7 0.570771
Target:  5'- gGGGGcCGCgAUGGCGGCGgcggCGGGc--- -3'
miRNA:   3'- -CCCC-GCGgUGCCGCUGCa---GCCUuagc -5'
5874 3' -59.3 NC_001806.1 + 817 0.72 0.458737
Target:  5'- cGGGGgGCgGCGGCGggGCGgccgCGGGcgCGc -3'
miRNA:   3'- -CCCCgCGgUGCCGC--UGCa---GCCUuaGC- -5'
5874 3' -59.3 NC_001806.1 + 1845 0.66 0.816152
Target:  5'- aGGGGagugGUUACGcGCGGCG-CGGGAggCGg -3'
miRNA:   3'- -CCCCg---CGGUGC-CGCUGCaGCCUUa-GC- -5'
5874 3' -59.3 NC_001806.1 + 2838 0.73 0.424003
Target:  5'- gGGGGUcCCACGGCGaccccgggcccuGCGUCuGAGUCa -3'
miRNA:   3'- -CCCCGcGGUGCCGC------------UGCAGcCUUAGc -5'
5874 3' -59.3 NC_001806.1 + 3551 0.68 0.692049
Target:  5'- uGGGGCGCgaucucauccgugcaCACGGCGcacACGUCGcccucGUCGc -3'
miRNA:   3'- -CCCCGCG---------------GUGCCGC---UGCAGCcu---UAGC- -5'
5874 3' -59.3 NC_001806.1 + 4070 0.69 0.668686
Target:  5'- nGGGGCGUC-CGGCGGgGggCGGg--CGg -3'
miRNA:   3'- -CCCCGCGGuGCCGCUgCa-GCCuuaGC- -5'
5874 3' -59.3 NC_001806.1 + 4103 0.77 0.252183
Target:  5'- gGGGGCGCgGCGGCGccucuGCGUgGGGGggcgCGg -3'
miRNA:   3'- -CCCCGCGgUGCCGC-----UGCAgCCUUa---GC- -5'
5874 3' -59.3 NC_001806.1 + 4260 0.66 0.80776
Target:  5'- -cGGCGCCGCGGCucgcGACuggCGGGAg-- -3'
miRNA:   3'- ccCCGCGGUGCCG----CUGca-GCCUUagc -5'
5874 3' -59.3 NC_001806.1 + 4447 0.7 0.600011
Target:  5'- uGGGCGCCGCGGgGGgccUGUgGGGAg-- -3'
miRNA:   3'- cCCCGCGGUGCCgCU---GCAgCCUUagc -5'
5874 3' -59.3 NC_001806.1 + 4478 0.66 0.832467
Target:  5'- gGGGGC-CCGgGGCGGgGggCGGAGc-- -3'
miRNA:   3'- -CCCCGcGGUgCCGCUgCa-GCCUUagc -5'
5874 3' -59.3 NC_001806.1 + 4530 0.68 0.68817
Target:  5'- cGGG-GCCACGGCcGCG-CGGGggCGc -3'
miRNA:   3'- cCCCgCGGUGCCGcUGCaGCCUuaGC- -5'
5874 3' -59.3 NC_001806.1 + 4571 0.69 0.649091
Target:  5'- cGGGGCGCgGgGGCGgGCccCGGAggCGg -3'
miRNA:   3'- -CCCCGCGgUgCCGC-UGcaGCCUuaGC- -5'
5874 3' -59.3 NC_001806.1 + 4624 0.66 0.832467
Target:  5'- uGGGGCa-CACGGCGcGCGUCcgcGGGG-CGg -3'
miRNA:   3'- -CCCCGcgGUGCCGC-UGCAG---CCUUaGC- -5'
5874 3' -59.3 NC_001806.1 + 4769 0.68 0.677471
Target:  5'- cGGGGCGgCGCcggagggGGCGGCGccgCGGGAg-- -3'
miRNA:   3'- -CCCCGCgGUG-------CCGCUGCa--GCCUUagc -5'
5874 3' -59.3 NC_001806.1 + 7644 0.68 0.707484
Target:  5'- cGGGGCgGCCAaGG-GGCGUCGGcgacAUCc -3'
miRNA:   3'- -CCCCG-CGGUgCCgCUGCAGCCu---UAGc -5'
5874 3' -59.3 NC_001806.1 + 10399 0.67 0.772802
Target:  5'- aGGGGcCGCCAC-GCGuCGUCG--AUCa -3'
miRNA:   3'- -CCCC-GCGGUGcCGCuGCAGCcuUAGc -5'
5874 3' -59.3 NC_001806.1 + 12220 0.68 0.725615
Target:  5'- cGGaGCGCCACGGCcggcauuuugaccGugGUCuGGAccgCGg -3'
miRNA:   3'- cCC-CGCGGUGCCG-------------CugCAG-CCUua-GC- -5'
5874 3' -59.3 NC_001806.1 + 13495 0.68 0.707484
Target:  5'- gGGGGUGCCGacGCaGGCGUCGGuAAUgGc -3'
miRNA:   3'- -CCCCGCGGUgcCG-CUGCAGCC-UUAgC- -5'
5874 3' -59.3 NC_001806.1 + 15293 0.69 0.639271
Target:  5'- gGGGGC-CCGCGaGCGugGUgCGGucauggCGg -3'
miRNA:   3'- -CCCCGcGGUGC-CGCugCA-GCCuua---GC- -5'
5874 3' -59.3 NC_001806.1 + 18849 0.67 0.735993
Target:  5'- cGGGCccgcguacaCCACGGCGGCa--GGggUCGu -3'
miRNA:   3'- cCCCGc--------GGUGCCGCUGcagCCuuAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.