miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5874 5' -53 NC_001806.1 + 54227 0.78 0.419527
Target:  5'- gGCCGGCGGgugAGCGCgCGGAuGCUCGGc -3'
miRNA:   3'- -CGGCUGUCa--UUGCG-GUCUuCGAGCUa -5'
5874 5' -53 NC_001806.1 + 34300 0.75 0.566119
Target:  5'- -aCGACAGcGACGCCggucccGGAGGCUCGGg -3'
miRNA:   3'- cgGCUGUCaUUGCGG------UCUUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 39601 0.74 0.649867
Target:  5'- aCCGGCAG--ACGCUGGAcgAGCUCGAg -3'
miRNA:   3'- cGGCUGUCauUGCGGUCU--UCGAGCUa -5'
5874 5' -53 NC_001806.1 + 75688 0.72 0.732592
Target:  5'- gGCCGcGCGcgAGCGCCGGGcccAGCUCGAg -3'
miRNA:   3'- -CGGC-UGUcaUUGCGGUCU---UCGAGCUa -5'
5874 5' -53 NC_001806.1 + 81324 0.7 0.860235
Target:  5'- cGCCGugGucGUGGCGCCcuuGGucAGCUCGGc -3'
miRNA:   3'- -CGGCugU--CAUUGCGGu--CU--UCGAGCUa -5'
5874 5' -53 NC_001806.1 + 99913 0.7 0.867219
Target:  5'- gGCCG-CGGUGGacaGCCAGGAGCguuucugUCGGa -3'
miRNA:   3'- -CGGCuGUCAUUg--CGGUCUUCG-------AGCUa -5'
5874 5' -53 NC_001806.1 + 6855 0.7 0.867984
Target:  5'- gGCCGGCuGgaagacCGCCAGggGgUCGGc -3'
miRNA:   3'- -CGGCUGuCauu---GCGGUCuuCgAGCUa -5'
5874 5' -53 NC_001806.1 + 85012 0.7 0.867984
Target:  5'- gGUCGGCGGggugccgcAGCGCCAGAAGCagCGu- -3'
miRNA:   3'- -CGGCUGUCa-------UUGCGGUCUUCGa-GCua -5'
5874 5' -53 NC_001806.1 + 148188 0.69 0.87551
Target:  5'- gGCCGcCGG-GGCGCCcGAGGcCUCGAa -3'
miRNA:   3'- -CGGCuGUCaUUGCGGuCUUC-GAGCUa -5'
5874 5' -53 NC_001806.1 + 33236 0.69 0.89669
Target:  5'- cGCCGugGCGGcgcuGCGCCuugcguGggGCUCGGg -3'
miRNA:   3'- -CGGC--UGUCau--UGCGGu-----CuuCGAGCUa -5'
5874 5' -53 NC_001806.1 + 114755 0.68 0.909602
Target:  5'- uGCCGGCAaaaguGCGaUAGAGGCUCGGg -3'
miRNA:   3'- -CGGCUGUcau--UGCgGUCUUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 32513 0.68 0.909602
Target:  5'- gGCCGGCGGcGACgGCCGGAcuGGCUgUGGa -3'
miRNA:   3'- -CGGCUGUCaUUG-CGGUCU--UCGA-GCUa -5'
5874 5' -53 NC_001806.1 + 12319 0.68 0.909602
Target:  5'- gGCCggGACAGcaa--CCAGAAGCUCGAa -3'
miRNA:   3'- -CGG--CUGUCauugcGGUCUUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 125640 0.68 0.910221
Target:  5'- gGCCgGACAGccccccgcccgagccGGCGCCAGAGGCcCGGc -3'
miRNA:   3'- -CGG-CUGUCa--------------UUGCGGUCUUCGaGCUa -5'
5874 5' -53 NC_001806.1 + 75137 0.68 0.921518
Target:  5'- cGCCGAgCGGgccGGgGCCguggAGGAGCUCGGg -3'
miRNA:   3'- -CGGCU-GUCa--UUgCGG----UCUUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 85391 0.68 0.9271
Target:  5'- -aCGGCGGUGACGCUcgcuAGCUCGu- -3'
miRNA:   3'- cgGCUGUCAUUGCGGucu-UCGAGCua -5'
5874 5' -53 NC_001806.1 + 131647 0.68 0.932429
Target:  5'- cGCgGAUGGgcgGgGCCGGggGUUCGAc -3'
miRNA:   3'- -CGgCUGUCau-UgCGGUCuuCGAGCUa -5'
5874 5' -53 NC_001806.1 + 118452 0.67 0.937505
Target:  5'- gGCCGGCGGguggacuCGCgGGggGC-CGGa -3'
miRNA:   3'- -CGGCUGUCauu----GCGgUCuuCGaGCUa -5'
5874 5' -53 NC_001806.1 + 44209 0.67 0.942332
Target:  5'- gGCCGACGGagGGCGCCccAAGCguguuuUCGAg -3'
miRNA:   3'- -CGGCUGUCa-UUGCGGucUUCG------AGCUa -5'
5874 5' -53 NC_001806.1 + 148009 0.67 0.942332
Target:  5'- cGCCGGaGGUcGCGUCGGcguccAGCUCGAc -3'
miRNA:   3'- -CGGCUgUCAuUGCGGUCu----UCGAGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.