miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5874 5' -53 NC_001806.1 + 961 0.67 0.955328
Target:  5'- cGgCGGCGGUGG-GCCGGGccucuggcgccGGCUCGGg -3'
miRNA:   3'- -CgGCUGUCAUUgCGGUCU-----------UCGAGCUa -5'
5874 5' -53 NC_001806.1 + 1112 0.66 0.959178
Target:  5'- cGUCGcaggcGCAGgcGCGCCAGguGCUCc-- -3'
miRNA:   3'- -CGGC-----UGUCauUGCGGUCuuCGAGcua -5'
5874 5' -53 NC_001806.1 + 6855 0.7 0.867984
Target:  5'- gGCCGGCuGgaagacCGCCAGggGgUCGGc -3'
miRNA:   3'- -CGGCUGuCauu---GCGGUCuuCgAGCUa -5'
5874 5' -53 NC_001806.1 + 12319 0.68 0.909602
Target:  5'- gGCCggGACAGcaa--CCAGAAGCUCGAa -3'
miRNA:   3'- -CGG--CUGUCauugcGGUCUUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 15260 0.66 0.969341
Target:  5'- gGCCGGCGGggAGCGCCAGcuAGa-CGGa -3'
miRNA:   3'- -CGGCUGUCa-UUGCGGUCu-UCgaGCUa -5'
5874 5' -53 NC_001806.1 + 17595 0.66 0.972286
Target:  5'- gGCCGuCAGgacCGCCAccgcGAAGCcgCGAUa -3'
miRNA:   3'- -CGGCuGUCauuGCGGU----CUUCGa-GCUA- -5'
5874 5' -53 NC_001806.1 + 20294 0.66 0.975022
Target:  5'- cCUGGCGGcccuggAGCGCCAGAccgGGC-CGGUg -3'
miRNA:   3'- cGGCUGUCa-----UUGCGGUCU---UCGaGCUA- -5'
5874 5' -53 NC_001806.1 + 32513 0.68 0.909602
Target:  5'- gGCCGGCGGcGACgGCCGGAcuGGCUgUGGa -3'
miRNA:   3'- -CGGCUGUCaUUG-CGGUCU--UCGA-GCUa -5'
5874 5' -53 NC_001806.1 + 33236 0.69 0.89669
Target:  5'- cGCCGugGCGGcgcuGCGCCuugcguGggGCUCGGg -3'
miRNA:   3'- -CGGC--UGUCau--UGCGGu-----CuuCGAGCUa -5'
5874 5' -53 NC_001806.1 + 34300 0.75 0.566119
Target:  5'- -aCGACAGcGACGCCggucccGGAGGCUCGGg -3'
miRNA:   3'- cgGCUGUCaUUGCGG------UCUUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 39601 0.74 0.649867
Target:  5'- aCCGGCAG--ACGCUGGAcgAGCUCGAg -3'
miRNA:   3'- cGGCUGUCauUGCGGUCU--UCGAGCUa -5'
5874 5' -53 NC_001806.1 + 44209 0.67 0.942332
Target:  5'- gGCCGACGGagGGCGCCccAAGCguguuuUCGAg -3'
miRNA:   3'- -CGGCUGUCa-UUGCGGucUUCG------AGCUa -5'
5874 5' -53 NC_001806.1 + 54227 0.78 0.419527
Target:  5'- gGCCGGCGGgugAGCGCgCGGAuGCUCGGc -3'
miRNA:   3'- -CGGCUGUCa--UUGCG-GUCUuCGAGCUa -5'
5874 5' -53 NC_001806.1 + 56699 0.67 0.942332
Target:  5'- uCCGcgAGcAGCGCgGGGAGCUCGAg -3'
miRNA:   3'- cGGCugUCaUUGCGgUCUUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 60723 0.66 0.962792
Target:  5'- cGCCGugAucGUcgGGCGCCAGGAGauggacguguUUCGAUa -3'
miRNA:   3'- -CGGCugU--CA--UUGCGGUCUUC----------GAGCUA- -5'
5874 5' -53 NC_001806.1 + 72770 0.66 0.962792
Target:  5'- gGCCGGCAGUcACGgCucgcGAAGCaCGAc -3'
miRNA:   3'- -CGGCUGUCAuUGCgGu---CUUCGaGCUa -5'
5874 5' -53 NC_001806.1 + 75137 0.68 0.921518
Target:  5'- cGCCGAgCGGgccGGgGCCguggAGGAGCUCGGg -3'
miRNA:   3'- -CGGCU-GUCa--UUgCGG----UCUUCGAGCUa -5'
5874 5' -53 NC_001806.1 + 75688 0.72 0.732592
Target:  5'- gGCCGcGCGcgAGCGCCGGGcccAGCUCGAg -3'
miRNA:   3'- -CGGC-UGUcaUUGCGGUCU---UCGAGCUa -5'
5874 5' -53 NC_001806.1 + 81324 0.7 0.860235
Target:  5'- cGCCGugGucGUGGCGCCcuuGGucAGCUCGGc -3'
miRNA:   3'- -CGGCugU--CAUUGCGGu--CU--UCGAGCUa -5'
5874 5' -53 NC_001806.1 + 85012 0.7 0.867984
Target:  5'- gGUCGGCGGggugccgcAGCGCCAGAAGCagCGu- -3'
miRNA:   3'- -CGGCUGUCa-------UUGCGGUCUUCGa-GCua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.