miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5884 3' -55 NC_001806.1 + 57773 0.78 0.407392
Target:  5'- cGUCCCGUCCgccgcaucggaGUCGuccuccguguccaggGGGACUGGAUCUg -3'
miRNA:   3'- cCAGGGCAGG-----------UAGU---------------UCCUGGCCUAGG- -5'
5884 3' -55 NC_001806.1 + 71677 0.77 0.438767
Target:  5'- gGGUCCgGUCCAUaaacAGG-CCGGGUCUc -3'
miRNA:   3'- -CCAGGgCAGGUAgu--UCCuGGCCUAGG- -5'
5884 3' -55 NC_001806.1 + 71240 0.77 0.456784
Target:  5'- cGUUUCGUCCGUUAGccGGACCGGAgucUCCc -3'
miRNA:   3'- cCAGGGCAGGUAGUU--CCUGGCCU---AGG- -5'
5884 3' -55 NC_001806.1 + 105745 0.76 0.47519
Target:  5'- gGGcCCCGUggGUUAGGGACgGGGUCCc -3'
miRNA:   3'- -CCaGGGCAggUAGUUCCUGgCCUAGG- -5'
5884 3' -55 NC_001806.1 + 20382 0.76 0.493958
Target:  5'- uGGUCCCGgcgUCCggCGggcGGGACCGGGgggCCc -3'
miRNA:   3'- -CCAGGGC---AGGuaGU---UCCUGGCCUa--GG- -5'
5884 3' -55 NC_001806.1 + 65399 0.74 0.592008
Target:  5'- cGGUCCCG-CCGUCGcu-GCCGGcUCCg -3'
miRNA:   3'- -CCAGGGCaGGUAGUuccUGGCCuAGG- -5'
5884 3' -55 NC_001806.1 + 57980 0.74 0.622254
Target:  5'- --gCCCGggcagcgCCAUCGAGGucuuCCGGAUCg -3'
miRNA:   3'- ccaGGGCa------GGUAGUUCCu---GGCCUAGg -5'
5884 3' -55 NC_001806.1 + 37932 0.72 0.712529
Target:  5'- cGGggCCGUCCGUCcaccccgccccGGGGCgGGGUCCc -3'
miRNA:   3'- -CCagGGCAGGUAGu----------UCCUGgCCUAGG- -5'
5884 3' -55 NC_001806.1 + 122773 0.72 0.732076
Target:  5'- --gCCCGUaCCAacUCGGGGGCCaGGAauUCCa -3'
miRNA:   3'- ccaGGGCA-GGU--AGUUCCUGG-CCU--AGG- -5'
5884 3' -55 NC_001806.1 + 54126 0.71 0.779309
Target:  5'- uGUCCCGgggCC--CAGGGGCCGGuaggcguguUCCg -3'
miRNA:   3'- cCAGGGCa--GGuaGUUCCUGGCCu--------AGG- -5'
5884 3' -55 NC_001806.1 + 150114 0.7 0.806177
Target:  5'- cGGcCCCGUCCc-CGGGGAccaacCCGGcgCCc -3'
miRNA:   3'- -CCaGGGCAGGuaGUUCCU-----GGCCuaGG- -5'
5884 3' -55 NC_001806.1 + 142156 0.7 0.814837
Target:  5'- cGUCCCGUCg--CGGGG-UgGGGUCCg -3'
miRNA:   3'- cCAGGGCAGguaGUUCCuGgCCUAGG- -5'
5884 3' -55 NC_001806.1 + 100380 0.7 0.823334
Target:  5'- -cUCCCGUcgCCGggcggcgCGGGGGCCGGGgugCCc -3'
miRNA:   3'- ccAGGGCA--GGUa------GUUCCUGGCCUa--GG- -5'
5884 3' -55 NC_001806.1 + 88357 0.7 0.831662
Target:  5'- uGUCCCGaaggCCAUCGGGGccGCCGGcugggCUa -3'
miRNA:   3'- cCAGGGCa---GGUAGUUCC--UGGCCua---GG- -5'
5884 3' -55 NC_001806.1 + 20088 0.7 0.831662
Target:  5'- -cUCCCGUCguUCGuGG-CCGGcgCCg -3'
miRNA:   3'- ccAGGGCAGguAGUuCCuGGCCuaGG- -5'
5884 3' -55 NC_001806.1 + 41537 0.69 0.855556
Target:  5'- --gCCUGUCCcgUggGGACCauGGAuaUCCg -3'
miRNA:   3'- ccaGGGCAGGuaGuuCCUGG--CCU--AGG- -5'
5884 3' -55 NC_001806.1 + 42644 0.69 0.855556
Target:  5'- cGUCgCGUCCGgugCGGGGGCUGGcgUUg -3'
miRNA:   3'- cCAGgGCAGGUa--GUUCCUGGCCuaGG- -5'
5884 3' -55 NC_001806.1 + 49471 0.69 0.863135
Target:  5'- gGGUCCCGUCgacgcgcgggcUAUUuuGGGgCGGGUCg -3'
miRNA:   3'- -CCAGGGCAG-----------GUAGuuCCUgGCCUAGg -5'
5884 3' -55 NC_001806.1 + 61466 0.68 0.891368
Target:  5'- ---gCUGUCCGUCGgcgccuGGGAUCGGAuaaaUCCg -3'
miRNA:   3'- ccagGGCAGGUAGU------UCCUGGCCU----AGG- -5'
5884 3' -55 NC_001806.1 + 111376 0.68 0.891368
Target:  5'- cGUCCCcggGUCUGUUggGGACacuGGGUUCu -3'
miRNA:   3'- cCAGGG---CAGGUAGuuCCUGg--CCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.