Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5884 | 3' | -55 | NC_001806.1 | + | 3334 | 0.67 | 0.921657 |
Target: 5'- gGGUCCC-UCCGgccgCGGGGggcuggcggGCCGGGcCCc -3' miRNA: 3'- -CCAGGGcAGGUa---GUUCC---------UGGCCUaGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 4728 | 0.68 | 0.91023 |
Target: 5'- -cUCCCGUUCG-CGGccccGGGCCGGggCCc -3' miRNA: 3'- ccAGGGCAGGUaGUU----CCUGGCCuaGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 5099 | 0.67 | 0.932154 |
Target: 5'- cGG-CCCGUCgGU-GGGGcCCGGGgagCCg -3' miRNA: 3'- -CCaGGGCAGgUAgUUCCuGGCCUa--GG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 5404 | 0.66 | 0.94172 |
Target: 5'- cGGUCCCG--CGUC-GGGuCgUGGAUCCg -3' miRNA: 3'- -CCAGGGCagGUAGuUCCuG-GCCUAGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 5857 | 0.68 | 0.891368 |
Target: 5'- cGGUCCCGcCCGcCGGacGCCGGGaCCa -3' miRNA: 3'- -CCAGGGCaGGUaGUUccUGGCCUaGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 12902 | 0.67 | 0.916059 |
Target: 5'- cGUCCCcacgggGUCCuccaaGAGGGCCGaAUCCu -3' miRNA: 3'- cCAGGG------CAGGuag--UUCCUGGCcUAGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 18070 | 0.66 | 0.953176 |
Target: 5'- aGGUCCCagacgagcaacccaCAUCGccGGGCCGuGGUCCg -3' miRNA: 3'- -CCAGGGcag-----------GUAGUu-CCUGGC-CUAGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 20088 | 0.7 | 0.831662 |
Target: 5'- -cUCCCGUCguUCGuGG-CCGGcgCCg -3' miRNA: 3'- ccAGGGCAGguAGUuCCuGGCCuaGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 20382 | 0.76 | 0.493958 |
Target: 5'- uGGUCCCGgcgUCCggCGggcGGGACCGGGgggCCc -3' miRNA: 3'- -CCAGGGC---AGGuaGU---UCCUGGCCUa--GG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 27781 | 0.67 | 0.921657 |
Target: 5'- uGGgCCC--CCAaaUCGGGGGCCGGG-CCg -3' miRNA: 3'- -CCaGGGcaGGU--AGUUCCUGGCCUaGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 30725 | 0.66 | 0.94172 |
Target: 5'- cGGcCCCGaccCCcgCGGGGGCCGccucuUCCg -3' miRNA: 3'- -CCaGGGCa--GGuaGUUCCUGGCcu---AGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 36048 | 0.67 | 0.927022 |
Target: 5'- uGG-CCUGUCgCGUUgucucuGAGGGCUuuGGGUCCa -3' miRNA: 3'- -CCaGGGCAG-GUAG------UUCCUGG--CCUAGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 36321 | 0.66 | 0.959552 |
Target: 5'- -aUCCCGUUUAUCGuguacucucccgccgAGGacgcGCCGGAcCCa -3' miRNA: 3'- ccAGGGCAGGUAGU---------------UCC----UGGCCUaGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 37932 | 0.72 | 0.712529 |
Target: 5'- cGGggCCGUCCGUCcaccccgccccGGGGCgGGGUCCc -3' miRNA: 3'- -CCagGGCAGGUAGu----------UCCUGgCCUAGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 41537 | 0.69 | 0.855556 |
Target: 5'- --gCCUGUCCcgUggGGACCauGGAuaUCCg -3' miRNA: 3'- ccaGGGCAGGuaGuuCCUGG--CCU--AGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 42644 | 0.69 | 0.855556 |
Target: 5'- cGUCgCGUCCGgugCGGGGGCUGGcgUUg -3' miRNA: 3'- cCAGgGCAGGUa--GUUCCUGGCCuaGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 44239 | 0.65 | 0.961652 |
Target: 5'- uGGUCCCGUgaaagUUGUCcGGGG--GGAUCCa -3' miRNA: 3'- -CCAGGGCA-----GGUAGuUCCUggCCUAGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 45163 | 0.66 | 0.94172 |
Target: 5'- ---gCUGUCCGgcuggaCAAGGAucgccCCGGAUCCc -3' miRNA: 3'- ccagGGCAGGUa-----GUUCCU-----GGCCUAGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 46799 | 0.66 | 0.946156 |
Target: 5'- -uUCCCaaUCCGaCGGGGACCGGGaCUg -3' miRNA: 3'- ccAGGGc-AGGUaGUUCCUGGCCUaGG- -5' |
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5884 | 3' | -55 | NC_001806.1 | + | 48254 | 0.67 | 0.916059 |
Target: 5'- gGGUCUa--CCAUCGAGGGCCugcucGAUCUc -3' miRNA: 3'- -CCAGGgcaGGUAGUUCCUGGc----CUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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